RNA id: XM_039795538.1


Basic Information

Item Value
RNA id XM_039795538.1
length 3935
RNA type mRNA
GC content 0.42
exon number 6
gene id zgc:153993
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5869055 ~ 5884023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTGCGCGCTTCTGTGTGTGTCACTTCCTTGTTCTGAAGTGCAGACGAAAACTTTTCAACCTACGGGCACGTCCGGACTTTTGTGACTTTTATTTCTTCAAACGAGCTAACTTTTGTGTTAAATGTTCGAACCAAACTTCTAGCTTGCCAGTTAATCATTCCTCGCTCCGAGCTGACTGAAGTTAGAAGTTATTATGGCTGACaacagagaagaggagagagaggacggAGAGGAACCTCAGGGCGCCGTGGGTGGGGAAGATGTCATTGACGATCCCATCATGGAGCGAGGAGCAGTGATCCTTAGAGGGTTTGTGATTGAACGTATAAACGCAGAGGACCCCAGTCGACACGTGTCCTCAGAGTATCTGGGAGGAAGGCCAAATGAACAACAGGAGCCCCAAATTAAAGAAGTGGTGGAACAGCTGATCAGGATTTCAGATGAGATAAACCGGAACACTGAGCTCCATCATCTAATTAACCAAGTTCAGGACGACTGTGCTCGGAACATCTTCATGACGGTGGCCAGGAAAATCTTTGCTGATGGCATCAACTGGGGTCGAGTAGTGGCTCTCTTCCATCTGGCCTACAGACTCATACtcaaggcAATGAACTCCAACCATCTAGAAAACATCCGAACAATCATCAGCTGGTTTCTGCAGGCCATCAGAGAGCTGCTCTACTCCTGGCTCGTACAGCAGGGAGGCTGGGAGGGGGTGATCCGTGGAATTTCACGCTGGAGGAAACTAACCATAGTAGCATCGGTAGCACTGGTGGCAGCTATTGTTTACTACAGGAAGACCCGCTGAGAGCATCGGACCTGGCAACCAGGGCTGCAGTCCCATCTCCTGGATAAACGCAGCGTGTAAATTAAGACAGTGTCCGGACATTAATTACAACCACTCCTCCACTCCATCTCATTAACCGGCAGAGGTCAAGTACTGTACATAATCATCTCTTCTCAGGATTTCAAAACAGAACAAACTAAAAAAAGTGCATTTGCAGCAAGCTGTCCACCGGACATCTCCATCAGCCTTCACCAGAAAACTGTAAGGAAGTACACATGAGCTGCTGCAACGCACCGTGTAGCAGCCATTTTAGAGGCTGTCGGAAGGTGATGGTGTTCATCGACATGTGACGTCACTGTAGTTGTATTCAACAGACTAAAGGACCTGACTCTACCTGAGCCAGGTCTCAGGTCCACATGGGTTGTGGGTTGGGGTCAAATGTAAATGTCTCCATGTCTTGGGTCTAAGCAGAATTTGGACTTGACCTGAGAAGACATAAAAAGCAATGAGCACATaaacaacaacatcaaattAAAAGTACTGTAGATTCATTATGATAGCTTGTGCTGGACATTTGCATGCATTTTAGCGATGAGGCAGCCACATTGGCTGTGTAGTGCTCGGCTGCAACCGAAACAATTTTAAACGGCCATGGTCTtccacatttttgtaaaacactttttctggatATATCAGGTAGATAAGACCTAGTCACAGGCCCTTTTCAAATCAGATACACATTTTCAGTCTTGGGAATACCTCCACTTAGTAGCCTATAATCATTCCCACTTTAAAGTTTATCTTTCAATATTATCCTCTACGTGAAAACCCAGGACTGTCACAGCTCAATGTAAAGCTAAAATAGGTTTATATTGGAgccatcgttttttttttttaatatgccaGCTTTGTTTCTGAGGAATCCTGTTTTACCGTCACTTGGTGGATGAGCCTCGGGCACTGTGGCTGTGGAAAAGAAGCCAAAAACGAAAAACAAATGAGAGCTTCAGGGGAATTCACAGCACGTCATAGTTGCAGTAGACCTTTTCACAGCAGAACATTTGGCATGTGAAAGCACAACAAGCACCGGTGTCATCATTACAGTAATGGCATACACAATGGCTGCATACCATTTTGTGTTGCCCCGCCCAGGGCCTTTGCCTTTTGTAATTACATTGGTAATGAAATAAGTTACACAATATTCCAAGTCGACGTGTCAGCTGAGGAAATGGGTCTATTGCCAACAAAACCCAGCGTCTGATTCGGCTGAATgtgaatttaatttaaacaaaTCATTGTATcgtcacatttctactaatctTAAGCTTCAGCTGGGTTATTGGACGTCTCTTACCGCAATGCTTCCTgagagttgttgtttttatgtaaCTTTGAgtgtcttaaaaaaagaaaaaaaagaaaatctgataTTTTCTAACTGTTTCTAAACCTTTGTACTAATAATTCACCCAGAGAATTTCATGTCCATCATTTAACCTTTTTAATGTGGAATTTTAGCTTCCAAGACACTGGGAATAAGTCCTCCCACCACACAACTCTGTAGCTGTGGTGAGTTTCTTTTAGAGGGTAAGATACTTTGTTGCTGGTGTTGATTCTGTGTTCATCGCTTAGCTTAGTAACTGTGGTCCGTTGGCCATCTCTGCGCCGTGAACACGCCTGAACTACACACTGGATCAAGCAACCAGCTGAATGTCGACGTACGCGTTTACAGCCGAGGTCGTGCAATTTTCTCTGCCAGCAGTGTTAACAAGCTCATTTCCGTTGCCTCTGCCTTTCTGTGATTGTCTTCCAAGGTGTGAATGTATGCCGGTCACACGGATACACGTGACCGAACTCAGCAGCCTAGAAACTGCTGTTAGCCTTGGTTAGCAGGTTTATGACCAACCAACCAATAACAAGAGAGGCAAAGGCCACAAAAGACATGTTGAAATCAACAGGTGATGTCAAACTGAGTACGTGCCTACACTAGCCTTTTGTCAAAAATGTTGATCTGTTATTCAGTCACACGAGAGAAGGAAGAAGAGACTTTTGTTTTCTATCTTTCTTTTCCATTTGTATCCCACTGTGAATGGTAGTATTTTAGATACTAATGCTAAGATGGATGAAGACTCTGGGTAACGTTAGCAGCGTTTTCAAgtagggatgtcccgatcagCTTTTTTTGGTCCCCAGTCCCGATCCGATTTTTAAAATCCCGAATATCTGCCGATACAGAGTCCTGATCCAATACTTGTATTTGCCTAAACAATAGAGCTGCACgccatttgttttgtttacaaaaataactaagTAAACAAAGTAATGTCTTCAGCTTAATAAATTTAACATTTAAGCATTTTTGTAAAAGTCAAATATGAAATCAACTTCTTCTTAGAATGTTGTAGAATTTACTGGCGGAAATGTTCAGAGTAGGGGGATCGGGGGGGGACTGCCCATATGGGCTCCGATCCGATCGGGACATCCCCATTTTCAACCAACATATTAGTTCGAGCTGACTCCTCACATTGAGATGGTGTACTGGGCCTACGTTTGGAGACGTACGGTATTTATCCAATTGTGAAAGTTGCTTTTACAATATTACAGAATAGGCCCGCTCAACATCACAGTCTAGATATTAATTTCTAGCCTACAGATGCTGGTTCATTTTTAAACCTGTAAAACCTCTGCtactgcaaaagaaaaaaaacaaaactatgtCCTTTTAGTTTGTAAGTTTTTAATAATCTCTGATTCTTAAGGTAAACACATGAGGGATAGGACCAGACTTTAGAAAGCCTTTTCAGCTGTTCTCTGGGGAAACCGGTTTATAGATAAATAAGTCTTTATTTAAACTAGTGCTTTTTGGTTATTACGATGTGTGAGGGTGAGATGATCTGATGGTTGATTTATCCGGTATCAGTCAGTGGCTTACAACAGACCTACCTAGGTGCTATTATCTAGTGCCATGTGAGCTTTAGTCAGATATTTATGCTAGCAAATTGATCTTGCACTTTTTAAAGGGATATCAcactatttatctatctattctGCTGTGTTTGAAAAATGTGACCTGATAAATTTTTTTATGATAGAAAAATGATCTAATTGGACTCCATTTCTGTGAATAAAGTAAATTATACCACTCA

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34421 lncRNA upstream 6188 5862659 ~ 5862867 (+) True G25663
TU34365 lncRNA upstream 193067 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 236025 5630664 ~ 5633030 (+) True G25593
TU34302 lncRNA upstream 978059 4890727 ~ 4890996 (+) True G25567
TU34285 lncRNA upstream 1031788 4836611 ~ 4837267 (+) False tshz3b
TU34433 lncRNA downstream 8698 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 27206 5911229 ~ 5912453 (+) True G25675
TU34492 lncRNA downstream 151433 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 152836 6036859 ~ 6037969 (+) True G25710
TU34500 lncRNA downstream 394678 6278701 ~ 6280787 (+) True G25713
XM_039795269.1 mRNA upstream 14566 5816034 ~ 5854489 (+) True LOC120555999
XM_039796037.1 mRNA upstream 64233 5764543 ~ 5804822 (+) True LOC120556427
XM_039796036.1 mRNA upstream 110806 5733290 ~ 5758249 (+) True LOC120556426
XM_039794571.1 mRNA upstream 197032 5659480 ~ 5672023 (+) False LOC120555666
XM_039794570.1 mRNA upstream 197032 5663719 ~ 5672023 (+) True LOC120555666
XM_039795087.1 mRNA downstream 33533 5917556 ~ 6021420 (+) False ano1a
XM_039795081.1 mRNA downstream 33550 5917573 ~ 6021420 (+) False ano1a
XM_039795080.1 mRNA downstream 34732 5918755 ~ 6021420 (+) True ano1a
XM_039795083.1 mRNA downstream 34732 5918755 ~ 6021420 (+) False ano1a
XM_039795082.1 mRNA downstream 34732 5918755 ~ 6021420 (+) False ano1a
TU34243 other upstream 1293410 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2083513 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3785736 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 4026244 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 150186 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 167864 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 168792 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 380951 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 403025 6287048 ~ 6288077 (+) True G25743

Expression Profile