RNA id: XM_039795566.1


Basic Information

Item Value
RNA id XM_039795566.1
length 2137
RNA type mRNA
GC content 0.49
exon number 13
gene id trip4
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16168475 ~ 16254605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGATGCCAcgcagtgtctgtgtgtgcctgtgttatGTCGCCGACTGGAAACGCGTTCATGATTCAGGTTTGGTTTGACACGCCGCAGACGCTACCTTTGGTCTGAGCTCGGAGTGTAAACTCTTTTTTAGTTGGTAAAATGTCAGAGGCTCTGTTGAAGTGGTGTGTGGACCAGCTACACCACAAGTTTGGGTTGGAGGCATGTGAAGACATCGTCCAATACATTCTATCCATCGGAAATGCTGAGGAGATTGAGGAGTATGTGGGAGACCTCCTACAGGGCACAGATGGGAGAAAAGGGCtgtttataaatgagttccTCTGCAGATGGAAGAAGACTCAAAGACAGGCCACAGATACCTCAAGTCTTATCCTTCACAAGGAATCCTTTTCTTCACCAGATTCACAAGACATGTCCAAAGATACCCAGAAGAAGTCTAAACGCAAGGGCCGTAACAAACAGGAGGCAATGACTGTGAGCCAAACAGAACCTGAGCCAGAGGCAGTCAAAACACCCATTGATCTGATGAGGGCCCACGAAAACAGTAGTTCTTCAACAAAGAAGAAAAGTAAGTTTGTCAGTCTCTATGCCAAAGAGGGACAAGACAAGCTGTCTATCTTACTCCCGGGGCGACACGCCTGTGAGTGCCTTGCCCAAAAGCACAAACTTATCAACAACTGCATCACCTGTGGTCGTATAGTGTGTGAGCAAGAGGGCTCCGGACCCTGCCTCTTCTGTGGAAGTCTGGTCTGCAcaagagaggagcaggagatcCTGCAACGAGACTCCAACAAAAGCCAGAAACTAAGAAAGAAGCTGATGGGAGACGGCGGAGAAAGAGATTATCTCCCACACCAAGAGGCCCAGATGAAGGCTGGCTTGGAGAAGGCTGTCCAGCACAAAGACAAACTGCTGGAATACGACAAGAATAGTGTCAGGAGAACGCAGGTTCTGGATGATGAGTCGGATTACTTTGCCACTGAGTCCAATCAGTGGTTGTCGCCCAATGAGCGAGAAAAGCTGaggaaaaaggaggaggagctgagagaaCTTCGCCATGCCTCTCGCAAGGACCGAAAGATCACGTTGGACTTTGCTGGCAGACAAGTGGTCGACGAGGGAAACAACCTTAATGAGTACTACAACAAGTTGGATGAGACCCTCATGGCTATGAACAGCGACTCTACGTCAAAATCGCCAATGTACTCTGAAAGACAAGGTGGAAGGCAGACCCTCGGAGAGCTGGTCAACCCCAACATAATGCAGTCTGCACCAGAGTGGGTGGATGTTGGAGGCAGTGGAAGCCACAAGAGAAATCTAAAGCAGGGAAAGAGCTCGGCAGAGGACAAGGGAGGAGAACAACGTTGCAAGTTGCGGCTCCAAGACAAAGACCTTCAGGAGATGTCTGACGGGGGCTGGTGCCTTAGCATGCACCAACCGTGGGCCACGCTGCTGGTCAAAGGCATCAAGAGggttgaGGGGCGAACTTGGTACACATCCCATCGGGGTCGTCTTTGGATTGCTGCTGCGGCCAAGAAGCCGACTCCTCAGGAGATTGCTGAGGTTGAAGCCATCTACCGCAATGTCTACAAGAAAGAGCCCAGGTTTCCCAAAGACTACCCCACTGGCTGTCTGTTGGGCTGCATCAACGTGACCGACTGCCTGTCTCAGGAGCAGTTCAGAGAACAGTTCCCTGATACCTGTGAGGAGTCTGCTTCCCCATTCGTCTTCATCTGCACCAACCCCCAGGAGCTGCTGGTGAAATTCCCCATGAAAGGGAAGCACAAGATCTGGAAGCTGGAGACTCACTACCACCAGGGTGCCAAGAAGGGGCTGGTCCCATCAGCTGCAGACTGACGTCAGAGGAAAAACAGTCTGGTCTCACGGGAACATGGCACATTATGTTTTCCCAAAAAAATGGCTTCATTCTACCCTGGGTTGTCCTGACATTTTATCAGGAGTTGGCAAAGCTGACAGCagctctgtctgtgttgttaaTTAGTGGCATTTGCATTTTACTTAAGGAAAATTGCTTAAAAGTATGCAGTACATAGACCTATAATAATATTGACAAATTTCTACATTCTGCTTTGTCTCTATTTTGATTGTTTGCAGAAATAAAAACTTTAATTATGTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23398 TRIP4; activating signal cointegrator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36877 lncRNA downstream 54 16166959 ~ 16168421 (-) True G27698
TU36856 lncRNA downstream 93692 16074565 ~ 16074783 (-) False LOC120556162
TU36855 lncRNA downstream 94967 16071569 ~ 16073508 (-) False LOC120556162
TU36829 lncRNA downstream 139303 16028887 ~ 16029172 (-) True G27659
XR_005638713.1 lncRNA downstream 319776 15818610 ~ 15848699 (-) True LOC120555431
TU36904 lncRNA upstream 67358 16321963 ~ 16324191 (-) False LOC120555730
TU36909 lncRNA upstream 132291 16386896 ~ 16387172 (-) True G27725
TU36911 lncRNA upstream 151207 16405812 ~ 16408563 (-) False LOC120555730
TU36913 lncRNA upstream 154865 16409470 ~ 16409936 (-) True G27729
TU36956 lncRNA upstream 302928 16557533 ~ 16558521 (-) True G27767
XM_039795572.1 mRNA downstream 8593 16072870 ~ 16159882 (-) False LOC120556162
XM_039795571.1 mRNA downstream 8593 16072870 ~ 16159882 (-) True LOC120556162
XM_039795573.1 mRNA downstream 8594 16072870 ~ 16159881 (-) False LOC120556162
XM_039795029.1 mRNA downstream 99940 16031670 ~ 16068535 (-) True gramd2aa
XM_039795033.1 mRNA downstream 99944 16031670 ~ 16068531 (-) False gramd2aa
XM_039795567.1 mRNA upstream 6289 16260894 ~ 16294060 (-) True LOC120556157
XM_039794737.1 mRNA upstream 68732 16323337 ~ 16408868 (-) True LOC120555730
XM_039794152.1 mRNA upstream 165258 16419863 ~ 16492643 (-) True itga11a
XM_039794151.1 mRNA upstream 165258 16419863 ~ 16492444 (-) False itga11a
XM_039794150.1 mRNA upstream 165258 16419863 ~ 16469549 (-) False itga11a
XR_005638870.1 other downstream 528515 15639769 ~ 15639960 (-) True LOC120556584
TU36517 other downstream 1324570 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 1698130 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2879211 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 3072709 13069996 ~ 13095766 (-) True G27075
TU37150 other upstream 1253518 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 1255345 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 1255523 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 1963517 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 2128100 18382705 ~ 18383642 (-) True G28265

Expression Profile