RNA id: XM_039795632.1


Basic Information

Item Value
RNA id XM_039795632.1
length 1152
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC120556194
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15017564 ~ 15043882 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGACTCAGTGCTAGCTAGCATGGGGGTCTATGAGGAGAAAAAGGAAACATGTGGAACCATCTGCCTGAAATACCTCCTGTTTAGTTTCAACTTTCTCTTCTGGTTGGCAGGGGGCGCCGTGATGGCGGTGGGTGTTTGGACCTTGGTTGAGAAGAGCGACTACATCAGCCTTCTCTCCTCTAAGACCTACGCCGCCTCCGCCTACATACTGGTCCTGGCTGGGGCCATCGTCATGGTAACAGGCGTGCTGGGCTGCTGTGCCACCTTCAAGGAGCAGAGGAGGCTACTGCGAGTGTACTTTGTCCTGCTGCTGTGTATCTTCCTGTTGGAGATCCTGGCTGGCGTCCTGGCTTATATCTACTACCAGCAGTTGAATGAGGAGCTGAAGCAGAACCTGAGAGAGACCATGACCCAGAAGTATAAACAGAGCAGCCATGAGCCCATCACCAGGGCTGTGGACAAGCTGCAGCAGGAGTTCAAGTGCTGTGGCAGCAACAGTTCCTCCGACTGGGAAGAGAGCGTCTGGATTCGCTCCAGCGACGCAAAAAGCAGGAAGGTGCCTGACAGCTGCTGCAAGACGCTCACTGATCTCTGCGGCCTCAGGGACCACCCATCCAACATCTACAAGGTGGAGgGTGGCTGCATCACCAAACTGGAGAAATTCATCCTGGACCATCTGAAGATCATCGGGGCGGTGGGTGTTGGCATCGCCTGTGTACAGGTCATAGGGATGGTGTTTACGTGCTGCCTATATCGAAGTCTAAAGGCAGAGCCGTACTaggagaagcagcagcagaagaagaagaagaagaagaagagtgggtgggtgggtgaggGAGGCGACTTCATCACCACATGCCGTACTCAAATAGCCCATAGGTTCTTTTCTTTGCAACTTTGGCAAGCAATCAAATTTCACATCTGAGGGTCTCATTTTGGTAAACAAAGGGTggaaaaacactcccaaggtTTCTTGAAGTAATTAGGCACTCAAACTGCAGCCTCAGCTACATCTTCCAAGATCACAGCgctgtgaggaaaaaaaaaagcctccgaGAGAAACTGATGGGGAATTTCTAACGCAGACTGTGGAAATTGGCGTGGGACAGACTCCTTGGGACTTAAACACTGTAGTTTTCTTCCACTCCTGT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36549 lncRNA downstream 76 15016590 ~ 15017488 (-) True G27450
TU36539 lncRNA downstream 63673 14953538 ~ 14953891 (-) True G27441
TU36538 lncRNA downstream 64220 14952685 ~ 14953344 (-) True G27440
TU36536 lncRNA downstream 67579 14949578 ~ 14949985 (-) True G27438
TU36531 lncRNA downstream 127501 14889777 ~ 14890063 (-) True G27433
TU36572 lncRNA upstream 7537 15050662 ~ 15053761 (-) False cfap70
TU36605 lncRNA upstream 106375 15149500 ~ 15154115 (-) True G27493
TU36611 lncRNA upstream 137614 15180739 ~ 15181020 (-) True G27497
TU36615 lncRNA upstream 318909 15362034 ~ 15374091 (-) True G27499
TU36613 lncRNA upstream 330370 15373495 ~ 15374091 (-) False G27499
XM_039795469.1 mRNA downstream 136425 14878022 ~ 14881139 (-) True LOC120556084
XM_039794711.1 mRNA downstream 189169 14811445 ~ 14828395 (-) False nr1h3
XM_039794709.1 mRNA downstream 189170 14811445 ~ 14828394 (-) False nr1h3
XM_039794710.1 mRNA downstream 189170 14811445 ~ 14828394 (-) True nr1h3
XM_039795302.1 mRNA downstream 212797 14740192 ~ 14804767 (-) True madd
XM_039795748.1 mRNA upstream 10503 15053628 ~ 15078830 (-) False cfap70
XM_039795747.1 mRNA upstream 10503 15053628 ~ 15078830 (-) False cfap70
XM_039795746.1 mRNA upstream 10503 15053628 ~ 15078830 (-) True cfap70
XM_039795901.1 mRNA upstream 138595 15181720 ~ 15356059 (-) False tspan4a
XM_039795900.1 mRNA upstream 138595 15181720 ~ 15356059 (-) False tspan4a
TU36517 other downstream 173659 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 547219 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 1728300 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 1921798 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 2712740 12304539 ~ 12304824 (-) True G26924
XR_005638870.1 other upstream 596644 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2464998 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2466825 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2467003 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 3174997 18218122 ~ 18220550 (-) True G28121

Expression Profile