RNA id: XM_039795647.1


Basic Information

Item Value
RNA id XM_039795647.1
length 4110
RNA type mRNA
GC content 0.46
exon number 14
gene id scml2
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18770382 ~ 18797783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGCGGAGTTGCAGCGAATATGGCGGCATGCATCTGATAGAAAGTGAGGAATCTCCCATCAAAATACCCAGTTTAAACGTGTCTGTGTAGGGAACAGCCTGTCTGACTTCAGCTCCTCTGCAGCTGCACGTTTAACTTTGGTCATCATGGGCCGGACACCACACAGAGATcaaaaagaggagaaagagagaagaagcagCATCACAGCAGGATCTCCCCTCGACAAATCTAATGAACCGTTCAGGTGGGAAGACTATCTGAGAGAAACTTCCTCTACTGCAGCGTCGCCTACTTGCTTCAAACAGTCCAGAGTCCCCCCCTCCAATGACTTTAAAGCAGGTATGAAACTTGAGGCACGGGACCCTCGCAACTCTAACTCTGTGTGCATTGCAACGGTGATGGGCATGATGGGTACTCGTCTACGCCTGCGTCTGGATGGAAGCGACAACACCAATGATTTCTGGAGACTTGTCGACTCGTTAGACATCCAACCAATAGGAACCTGTGAGAGGAACGGAGACATGCTGCAGCCACCGCTGGGTTTCAGGATGAATGCCTCCTCGTGGCCCATGTTCCTCCTGCGGACGCTGAGTGGAGCAGAAATGGCCCCCGCCTCtgcttttaaaaaggAACCAGCCAGCCCGGTTAAAAACTACTTCCAGCCTGGTATGAAGCTGGAGGCGGTGGACAGGAAGAACCCCTACCTGATTTGTCCTGCCACAGTgggagaggtcagaggtcaggagaTTTTCGTCATGTTTGACGGCTGGCGAGGCGCCTTTGACTATTGGTGCCCCTTTGACTCCAGAGACATCTTCCCCGTCGGCTGGTGTGCCTTGACAAAACACAGCTTACAGCCGCCTGGAAATTTCTtTACCCTCCCTGGTGCACTTCTTGCTCCTGTTTCTTCCACCTCAGCCTCCCTCACTACACGTCGCTCCTCTTccaacccctcctcctccatgcagaCTTCATACCGACTGCCCAATCCCTTGCCACCCCTCCCTGTGCGCAAGGGTGTCCGAGGTCGACGTCCCAAATCCCAGACTATTGCTTTGTTGAAGGCAGCGGCTGAGGCTGCCGCGGCAGCAGCAGTAAATGGAGCATCACAGAGCCCTGCCAGAACGATCTCTGAGGCTCAGTTGGCCCCCAGACCACACAAGAAGAGAGGGCCAAAGCCTAAGAGCAAGAAGAAGCCTCGGCTGGTGCAATCCCAGGGTGCACCAGCAGTTACAGTTCCACCTCCAGAGACCAGACTGAGCTCCGGACACGTCTCAGCAGacaacaaccatagcaacagCTCAAATGTAGTTTGCACAGtgtgtgtctatgtgaacAAGCACGGTAACTATGGCCCGCATCTGGACAGAAAACTAGTGCAGCAGCTCCCGGACCACTTTGGTCCAGCTCCAGTAAATGCAGTGCTTCAGCAGGCTGTTCAGGCCTGCGTGGACTGTACGTATCAGCCCTCTGTGATGCTGTCATTCCTACAGAGCCAGTCCCACACAGGAGGAGAGGTCATCAGAGTGCGGTCAGAGCATGGTATCCGCTACGTGAAGCTGCCCTCCGCCTCCAGTACGTCATCGGTGCTGCGGTTTCTGGAGAACATGTGCCAACATCTGGAGAGTGACAGTCTCTTCAGCTCGCAGCCCTTTAGCCCCTTCAGCAACAACTCGCGCTTCTACAACAGGACCAAGTCAGAACCACTGTCCCAACCTGAGAACAGCCTGTCCAATGACGATTCCACAAAGGATCCCGCTCCCAGCACCCGCCCCCCTCACACCGCATCGGACTacagagcaacaaagaaggAGCGGCCATATTaccctggacacacacacacgccgccaCCCCTAAGACGGGTCAGCTCCAACCCAACCGAACTTGGCCAGATGTGTCCACCCAGACGAGTGGAGGCAGCTAGCTCAACAACAGGCCCAGACCACATGAAACAGGACAAGGAGGGTTCAGGGAACGACGCCTCCACCTGGTCAGTTGATGATGTCATGCGGTTTGTCCTAGAGGCTGACCCCCAAACTCTCGGCCCGCACGTCGAACTGTTCAGGAAACATGAGATTGATGGCAAAGCTCTGATGCTGCTGCGCAGTGATGTCATTATGAAGTACATGGGACTGAAGCTGGGCCCGGCGCTCAAACTCTGTCATCACATTGAGAAGCTGAAACAGACCAAACAATAGAGGATGAAGGCACTCTCTTTTCTCACTGGcaacttaacacacacacacacacacacgcgcacgcacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacatacttttcTACAGGGATGTAGTGCAGTGTAAAGCCACCTGAACCAGGGTCATAGCTAGCATTGAGGACACTGAGGTCAAGccctctgtattttttttctgtgtatgtatttgGAGGTTGCGGGGAGCATTCAAGAACAAACTTACACACCATGGTCATTTTATGAACTGAtcccagtattttttttaataaagcagTTTAAATCTGACTACTTTTTGgccaacaaataaataaatcaatagtCTTTTATTCTGGACAGTGTAGACAAGGTTTTGAAACGACATTTAGACCATCATGCTGTGAAACAAAATTAACAGTTAACTGACTAACCAGAATCAATGTAACGAAACACATTTGAGATCTTTTTCATTTCCAGTCAAATTATTTTGAGGGTGGTGTGGTGTACATCAGGGGACTTATGGCCTCAGTATTGCTAAACTCCTGGCTATGGCTCTGATGTGAAATCACAGATCACAATTTACTTTTACATACAAACAGATACATAGTACATTCATTATttgcattactgtaattggtATCAGATATCTCAGCATTTGTTTATGTTAGTGTCTTTTTGCTTCATTATGAACAACTGGAGGCCATAATTTATCAATCTTTTTATTTACCAGACATTCTGTAGGATTTGCAGCTTTATCTCTTTGGATATTCGGCTGTTACAGTTTTTTGGTTAGAATTTCAGGATGGACACTCTCCTCTCCAGATTGGAAAAGTTAGTTCAGGTACTGGCAGTGAACGTCTCTCGCTGCATCATTTCTAACAATGCAATAAAGTTTTGTGAATGACTGTGTCTGTTACAGGCTGTTACATTTAGTTTATGCAAGGCATTGAATGTATGAAGTTGTGAGCATTATTATTAACAGATAGTTTCATTCCAAGATGTTGGAGAAATCATTTTGTTTCCTGAAGTCAATCATTGCATGAATGGTTCCTGTCCTCAAacacttttaaaacattttacatgATTGTATTATGCTTTGACAGTCAcactgtcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgagataTACACTTAAAATGACTGGAATAAATGCTGACAAGGCCATTGACTGTCTAGTTTGAGTGCTATACAGAACGTTAAAGTGCTCCTGAGAGAGTACATGATGGGGAAACTGTTTTGTATAAAGTCAAgccaaaaggtttttttttatatatcattTTGTACTGTAACAAAGTGTATGAACCTGAGCGTAAGTGTAATCAAATTTTTTTCTGCCTGAAATACTTTTTGTGTGCATCATGAAATAACTACCTACAGGACAAATCTGTGTCTGAGTAATTATTTACATGTCTAAAAGTTTTATCTGTTTTTTGATGGCAGAAATACTAATTTTCTGAACATTTCAGAAGCATTTTCTAACTAAATCATGTGTGTTGTAGCTGCATTCTCACTGTTGCTCTCCTGTAGTGGTAACAAGTTGATACTTGAAACCATCTTGCTTTAATGTAAAACTCAGGTTTTAGAGTTGTTTTGTAGAAGATGTTTTACATCATTAGCATGTTGTGTCCATTACTACGACATAAAGGGACTGCACAATAACTATGTATGTTTTTATGCCTTGTCATCTATCACTCCGTAGCCtttcatatgtatatatacacaacttTTTACTGTAAGTTCAACAAAAAATGTTTGTTGATTATGTTTGATATGCATTCACACAttaaacatttgtttaaatCA

Function

GO: NA

KEGG:

id description
K11461 SCMH1; polycomb protein SCMH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37505 lncRNA upstream 154573 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 160504 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 325086 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 589181 18004828 ~ 18181201 (+) True LOC120555993
TU37361 lncRNA upstream 851186 17918900 ~ 17919196 (+) True G28083
XR_005638784.1 lncRNA downstream 48486 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 256341 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 259763 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 274037 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 285424 19083207 ~ 19087001 (+) True LOC120555697
XM_039795069.1 mRNA upstream 41660 18721369 ~ 18728722 (+) True rs1a
XM_039795071.1 mRNA upstream 41660 18721369 ~ 18728722 (+) False rs1a
XM_039795673.1 mRNA upstream 71884 18677341 ~ 18698498 (+) False phka2
XM_039795672.1 mRNA upstream 71884 18677356 ~ 18698498 (+) True phka2
XM_039795675.1 mRNA upstream 71884 18677356 ~ 18698498 (+) False phka2
XM_039796077.1 mRNA downstream 78169 18875952 ~ 18889502 (+) True ace2
XM_039794245.1 mRNA downstream 101664 18899447 ~ 18909277 (+) True zgc:113276
XM_039794247.1 mRNA downstream 101664 18899447 ~ 18909277 (+) False zgc:113276
XM_039794246.1 mRNA downstream 101665 18899448 ~ 18909277 (+) False zgc:113276
XM_039794031.1 mRNA downstream 112303 18910086 ~ 18925628 (+) False pir
TU37478 other upstream 201902 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1027648 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3283961 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3323990 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5532563 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 689463 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 699955 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 700310 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 714573 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1913321 20711104 ~ 20761147 (+) True G28770

Expression Profile