RNA id: XM_039795656.1


Basic Information

Item Value
RNA id XM_039795656.1
length 4258
RNA type mRNA
GC content 0.51
exon number 9
gene id ccdc102a
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6847479 ~ 6901349 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccacacccccccctTCATCCACCAAACCACTGCCTCCATCATGAACCACACCCCCAGCCCCCACCTGTCGGACGGCGGTAAGTCGGCCGGAGGCGGCCTGCTGTGCAGCCTGGGCCTGGGGTCCGACAGGGGGATCCGCTCCCCGGACAGCCTCACCCACACCCCCAGCCCCACCGGAGAAACGCCCAGCTCCAGCCCCCCGCTGCTTCTGTCCCCGGGGCTGGGAGGCTTTGGCCTGGGGTCCCTGGGGGCCATGGGCGAGGGAGCCGGGGCCGACTGGGAGAGCAGGGAGGAGCTGAGGCTCCGGGAGCTGGAGGAGGCTCGGGCCAGAGCCGCCCAGATGGAGAAGACCATGAGGTGGTGGTCGGACTGCACCGCCAACTGGAGAGAGAAGTGGAGCAAGGTCCGCGCCGAGCGTAACCGCGCGCGCGACGAGGTGCGCCAGCTGAGGCAGCGGCTGGACACCCTCACCAAGGAGCTGACCAGCGTTCGGCGCGAGCGGCAGGAACTGGCCTCCGAGAACGAGACGCTGCGGCTGGAGACGCTGCGTCTCCACGGCGGCCATGCCGCCGTCGACGCTCCCCCTCCGTCGGCCACTTctccgtcctcctcctcctccccggCACACCCTCGCGGTGgtgcttcctcctcctcctctccatccatacctccctcctcccccgcctcctccgcctcctcctctCAGGTCCACGCCGACGGGAAGCTGGACGGGGTGGACCGGGTGGGGGAGGGACCCCCGGGGTCTCCAGAGCCAGAGCCGGTGAGGGACGTGGACTTGGACAGACAAAAAATGGCTCAACAAAAgGACCTGGAGGTGCTGGAGTCGGTCCTGCGTTCCCGGGCCCCGGACGGCGACACGCAGGAGGCCTGGGCAATCACCTCGCGCTCCTCCTCGGGTCCCAGCCGGCAGGAAcgcagcaggcagctgtggGAGGACATTAGCACGGTGGAGGAGGACTCCAGCAGACTCAACGCCCTGCAGCTTCGCCTGGATGAGTCCCAGAAAGTCCTGCTGAAAGAGCGAGAAGACAAGCTTGCACTGAGTAAGAGCATCGAGAGGCTGGAGGCTGAACTCACTCAGTGGAAATGTAAATATGAGGAGCTCAGCAAGACCAAACAGGAGGCCCTCAAACAGCTGAACCTGCTGAAGGAAATGCACCAAGATGAACTCGGCCGCATATCTGAAGACTTGGAGGACGAACTGGGAGCCCGAACCAGTATGGACAAGAAACTAGCTGAACTACGTACTGAGATGGAGAGGCTGCAGGTGGAGAACGCTGCGGAGTGGGGGCGCCGGGAGCGCTTGGAGACGGAGAAACTTGCCCTGGAGAGGGACAACAAGAAGCTGCGAGCTCAGGCTGAAGACCTGGAGGAGCAACTGGCCAAGAAGCGCCGGCAGGCGGCCTCGGCACTCGACATCGACCTCAAGGCCATCCAGAGCGagctgtttgagagaaacaagGAGCTGGCTGACCTCCGCCATGTCCACGCTAAGCTGAAGAAGCAGTACCAGGAGAAGACGGCCGAACTGGTCCACGCCAACCGGAGGGTGGAGAGCCACGAGGCCGAAGTCAAAAAGCTGCGACTGagggtggaggagctgaagaaagaATTAGGCCAGGCAGAGGATGAGTTGGATGAGTCCCATAACCAGACCAGGAAGCTGCAGAGGTCTCTGGATGAGCAGGTGGAGCAGACTGAGAACCTGCAGGTGCAATTGGAACACTTACAGTCAAGacTGCGGCGGAAGCAGCAGAGTCCTGGTCTGTTTGGGAAAATGCGATCAGCTCGATTCAGTCCTGAAAACCAAGATGGTCCGACTAGCGACgtggacgaggaggaggaggagctgcagctCCAGATcccatgagacacacacacacacacacgcacacgcacacacacagtgatacagGACATACTTTTACACAAACGTATAGAAGTTGGATACtgttgctcttggggggaaacTTTGTATCTCAAGATATGGTCACATTTTGCTACAGAAAGCAGCTGTCAGGCCCAGCTAGTTCTTAAAGTACCAGTCCAACATTATGGGAGACATTTTACCCAGAGTCAGATCAAAAGGTCAATATCACTTTTACCTCTGTTTATCCACGCGTCCTTGTTGGATGCAAATGTTAGCATCGCTGCTTGCAATAATCAAATTATcatcaaaaacaaatgaacaaaaaaagcaaagcaagCCTTGTCGAACAAAGAGACTGCAAAGATGCCACACAATTGTTTATCTGGACTTTAAACATGAAAGAGGTAACGTGACAAATTTTCCACCAAGGAGCAATCACACACCTACGGTAATCCTCacatggaacacacacacattctcatacacactaagacacacacatgcttcgACATACAGGCGCACAGCAACAGGCTCAGCAGGCGTTTGACAGACATTAACAGGATGTCCGGTAGTGTAATGCTGAATGAAAGGATCTTTCTTCAACTTCCACCAAACCACTCTGGCAGAGGCCGACCTGTATCATCCTTTCAGTGTACTCCTTCTTACCTCATATCATCACAAGCATTGCACCTGTCGCATCTGAACTGTGCTACTGTATTCAAACAAGCCCCGAGCCCACATCTACATCACCAGTATTATTTCCTCATAGCGTGTGCTGTGAACAAAATGCTTTCCATGTCCCCCTGAGCTTGCAAATGTTGATATACCACAAGGGAATGTCAGTCAGAAATTTCTTCCAAATATCGAAGTCTATGTCCCACGTATTTCAAGTTCACAACCAATGCTGGGAGCACACTACACCTATCCACTTTTCTTCATAGCAAATGTGCTTAATGCTGCCCTACTTGCAATCTATCATTAGCCGATTTTCAGTTTAAAAGCATGCAACCTGCTCTTGAGGGCTGTGTTCAGATTTTGGGCATGAACGAAGAATACAAAAGAGGCACAAAAGGCGCAAATAGGTCTATGCATTTTTCTATACCCAAGACCTGAATCCGGCTCTTACCTTTCAGACTCGACTCAGATGAACCCGCGTGCTACTGCCGAATTTGAGACCTGAACCAGAGGTTTTTGTTATTTCCTCTCCAAAGACAAATAGGTATATGCTTGTTTTAGAAAGGCTTTTTACACACATAACAATGAATGAAAACAAtatgcaccacacacacatatataacatcTACTAGCCAATAAGCCATAGGTTTAGTGGCAGTACACACCTGTAATGTGATCTAATGTTGCACTCTTGTCTGAAGATGACAACAGAACGTACCGTTGAATCTCTCCGTATTGATCTGCCAACCCCTGCAATGGtgtgcattttaaaaaaaaaaaaaaaaaaagagggaaagggATGAAGTGTACATCCTGCAGCATTTGAGGGAAATGTAAAGTAGATGGAGAAAGGAGTAAAAGGCCTGTAACTGTGGGGCACTTGTGTGTGTACTAAGCCTGATCATTATTTTAATGATGTAGTGTGTTCCCAGCATGACTGAGGCTGCTCCTCGACAATAAACAAATGTAACAGTACATAGGTAATAtgtacgtaaaaaaaaaaaaaaagcttagtaAGAGAATGTACAACATCCTTGTTAAACGAAGAGATTGTGGGATGTAATGGATGGCGttgttagtaaaaaaaaaaaaaaaaaatctcttcttTTATTGTTTCTTGTGAAGGAAAATATGCATCTGTGAATGTCCACTAAAGGGCCTGGTCACATCAGCATTTACATCTGCTTCATTTCCTGAGAAAGGCCTATTCATTCAGTCTGGGTGGAAAACGCCTCCAAAAGCAGCATTTAGACATCACTGAAACCCAGGCCAGTAAATTTCCCGTAGGCTTAATTATCCCCGGCGCCTTTAAGACGGCCCATGTGTTCAACAGTAGGGGGAGTTTTTGGATATGCTGCGTGTTGGACTGAAgagtttaatttatttgtacAAAACTTGGTTGGGCTAAATCTCCCGCCTGTGAAAGAGCTCTAGAGTCTAGCACAGGCGGGGATGGATGCAGTTGTGAAAGcaataaaacattcatttatctTCCACCGCCGCCCACAGTCGCGCTCTGCCTCGGCCTCAACTCTGAACGCTGGAAGGGGACCAAGATATTTTTACCGATCAGGATTCTGAACTATTTATGTTGTCGTTGTTATGGTTTAGTTTTTATAAATGATCTGTACCACGGTGGTTTTGTATTAGCTCTATAAATGTCAACTGTACATATAAAAGAAGCATGAGTAA

Function

GO: NA

KEGG:

id description
K16759 CCDC102; coiled-coil domain-containing protein 102

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34717 lncRNA downstream 1423 6845813 ~ 6846056 (-) True G25877
TU34715 lncRNA downstream 58852 6788342 ~ 6788627 (-) True G25875
TU34713 lncRNA downstream 108465 6699432 ~ 6739014 (-) False G25874
TU34714 lncRNA downstream 108465 6706577 ~ 6739014 (-) True G25874
TU34688 lncRNA downstream 205493 6641670 ~ 6641986 (-) True G25851
XR_005638826.1 lncRNA upstream 5 6901354 ~ 6963722 (-) True LOC120556213
TU34751 lncRNA upstream 8901 6910250 ~ 6922001 (-) True G25907
TU34756 lncRNA upstream 99814 7001163 ~ 7005653 (-) True G25910
TU34767 lncRNA upstream 153047 7054396 ~ 7054600 (-) True G25920
TU34769 lncRNA upstream 176858 7078207 ~ 7078433 (-) True G25922
XM_039795937.1 mRNA downstream 154148 6642164 ~ 6693331 (-) True dok4
XM_039795958.1 mRNA downstream 217191 6598675 ~ 6630288 (-) True nadsyn1
XM_039795655.1 mRNA downstream 256840 6534042 ~ 6590639 (-) True tpcn2
XM_039795883.1 mRNA downstream 323124 6509259 ~ 6524355 (-) True pop4
XM_039794172.1 mRNA downstream 338785 6506363 ~ 6508694 (-) True LOC120555473
XM_039795920.1 mRNA upstream 68929 6970278 ~ 6982361 (-) True LOC120556364
XM_039795923.1 mRNA upstream 104493 7005842 ~ 7023172 (-) False LOC120556367
XM_039795922.1 mRNA upstream 104493 7005842 ~ 7023172 (-) True LOC120556367
XM_039795925.1 mRNA upstream 127217 7028566 ~ 7042141 (-) True hdgfl3
XM_039795924.1 mRNA upstream 127981 7029330 ~ 7042139 (-) False hdgfl3
TU34701 other downstream 202873 6642446 ~ 6644606 (-) False dok4
XR_005638726.1 other downstream 679950 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 4570388 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 4571470 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 5014085 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638761.1 other upstream 431435 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 1242858 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 1951438 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 2393719 9295068 ~ 9296746 (-) True G26298
XR_005638773.1 other upstream 4575415 11476764 ~ 11510299 (-) True mtfmt

Expression Profile