RNA id: XM_039795661.1


Basic Information

Item Value
RNA id XM_039795661.1
length 4035
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC120556218
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23550192 ~ 23568550 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggagagagatgtGTGAGAGAAATATAAAGAAAGAGTAAAGTTCCTATACAAAAATCTGAACCTGAAGCCAGGAGCTCACTGCACTCAACAAGTGAGGTTGTGCTGCTAGACTCTACCCTTCTTTGGAGTTCCTGTGTGAAACTCACATTAGGAGAGGTGAAAGTTCAAGGGTCAGACGTAGCGGCAGCGTGTGAGAATGTTGGTGAGGCGTCTTCTTTTTCTCATCCTGGGAATCACCACAGCCACTGTTGTTTCTGCTCAAGGATCATGGAGAAGAGACAACAAAGAGTCATCCCCTGCTGTGTACCACTCTGATGACAACCATGAGTGGACCACATGGTTCAATGTTGATCACCCCGGAGGTCGCGGAGACTATGAGCAGCTGGAGGCCATTCGCTTCTACTACCGTGCTCGAGTGTGTGAGAATCCCCGGGCAATCGAAGCCAGAACCACTGAATGGGTCCCAGCTCGTGAAACTGGGGAGACGGTCCATGCAGACCCCACTGTGGGCTTCTGGTGCCTCAATGAGGAGCAGGGTCCTGGACGCAACTGCTCCAACTACGCAGTCCGTTTCCTCTGTCCCAAAGATAACAGTGTAAACATTCAGGGTAACTGGGGTCCATGGTCAGACTGGAGCCCATGCCCTGCACTCTGTGGTCAGGTGGGGGCCCAAGTGCGCACGAGACACTGCCAATCTCGCTCAATGCCTTGCAGTGGGCCTCAAGTGGAAGGGAAAGCATGCAATGGACCGGAGTGCCCGAAAACAGATTGCTCCCTGCACTGTGTAATGGGGAAGGTGAATGCTGAGTGTGACGTATGCATGTGTGAAGAACACATCCTGCTGGGTTCTGTTCGTGGTGCTGGGGGTCTCACTGCTGAAGGGGCTATCATCCTTCGCTCTGGCAAAGTCCTCACCCTTACCGACCACAACGGCCATTTCCGCATCCCTGGTATCTGCCCTGATGGCAACACCACCCTGACAGTCAGCCTGCAGGGTCACAGCACCCATAGCGTTGTTGTGCCCCACAGTGCTGAACGTACCTCTGTCCTCAGTGTCCAGCTGAAAAGAACAGAGAAGCTTTATGTGTTGAGCAACCCTGAGAGCAAGGCCAGGAGGGAGGGACAAACTGCTGCTTTCTGCTGCAAAGTGGCAGGAACACCACAACCGGACAAGTACCAATGGTTTCATAACAACAGTCTCCTGGAAAAGCAGTCTGAGAGCATCTTGGTCCTAAAAAATCTGCGTACTGAGCAGACTGGGGAGTACTACTGCAGAGCAACTGGTCCCTCTGGGGCTATTAAGACCAAACCAGCTACACTGAAAGTCGTAGGTAGAGATGAACATTCATGTAATCCCAAGCCTGAATCCCATCTCATCCGTCTTCCACATGACTGCTACCAAAACAGCACAGACTCCTTCTACTACGATGTAGGCAAGTGCCCCTCAAGCTCATGTGCTGGACAGCTGGACAATGGCATCAGGTGCAAAGACAAATTGGCTTACTGCTGTGGTGTCAAAAAGATGGAGGAGAGGCAGCTTACATGCCAGAGCTACCAACTGCCCACCATGGTGGTGACTGAGTGTGGCTGCCAGAAATGTGTGGACTCCAAGGCTATTGTGCACGGTAGGGCCATTGCTGCAGACAATGGTGAGCCAATGAGATTTGGCCATGTCTATATGAATGGAGTCCGAATCAGCCGCACAGGGTACAAAGGTACATTCTCCATCCAGGTTCCTCCAGATACAGAGAGACTAGTCCTGACTTTTGTGGACAACTTGCAGAAATTTGTCAACACCACAAAGGTACTTCCATTTAATACCAAAGGAGGGGCTGTTTACCATGAGATCAAACTTCTAAGAAAGAAAGCCCCTGTGACCATCAGCTCTACAGAAATCAACACTCTGGAGCTTGGGGAAGTAGAGGGCCAGGAGGCAATGGTTCAAATCCAGATTCCTCCCTATGCCTTTTATACGGAAAAAGGAGAAGTCTTCACTGGTAATGTAAATGCTAGCGTAACGTTCCTTGACCCCAGAGACATCTCGACAGCTGCTGCAGCTCAAAGTGATCTCAACTTTGTAGGAGATGAAGGGGATACCTTGCCACTGAGAACCTACGGGATGTTCTCAGTTGACTTTAGGGGTGAGGAAAACAATGAGCCCCTAAACGCAGGCGAAGTGAAGGTGTTCCTGGATTCTGCCCAGGTGAAGATGTCTGAGCACCTCAACACCATGAAGCTGTGGTCACTGAACCCTGATACTGGCCTgtgggaggaggaaggaagtcTACAGgtggagaagaaaagaagaggtAAAAGGGAGGAGAGAACCTTTCTGATTGGCAACATGGAGATCAGAGAGAGACGTCTTTTTAACTTGGACGTCCCAGAGAACCGCAGGTGTTATGTGAAAGTGAGGGCCTTTCGCAGTGAACGCTTCATGCCCAGTGAGCAAGTGGAGGGAGTTGTGGTGAGTCTTATAAACATGGAGCCCACAGCTGGCTACTCCAGTAACCCACGTGCCTGGGGTCGGTTCGATAGTGTCATCACTGGCCCCAATGGTGCCTGTCTTCCTGCCTTCTGCGATGAAGAAAAAGCTGATGCTTACTCTGCCTATGTCATGGCTAACCTTGGAGGAGAGGAGCTGGAGGCTGTCTCTTCTGCTCCCAAACTCAATCCCAATCTCATTGGAGTGCCCCAGCCTTACCTGGGAAAGCTTAACTACAGGCGGACTGACCATGAGGACCCAAGAGTGAAGACGACTGCATTCAGCATCAATGTGGCAAAACCAAGTCCCAACACAGCTGAGGAAAGCAACGGACCAGTGTACGCATTTGAGAAGTTGAAAGAATGTGAGGAGGCCCCGTTCAGTGCGGCACACTTTCGCTTCTCAAGAGTAGAAGGAGACCGCTACGATTACAACACAGTGTCTTTTAATGAAGATGACCCAATGAGCTGGACAGAGGACTACCTGAGCTGGTGGCCCAAGCCCATGGAATACCGGGCCTGCTACATCAAAGTCAAAATCAACAGCCCACATGAGATCAATGTGCGCTCCCGCAACATGGGTGGCACCCACCCAAAGACGGTAGGACAGCTGTATGGCCTCCGGGACACTCGCAGCATCCGTGACATGGACCAGGCAACAATTTCAGCTGTGTGCCTGGAGTTCAAGTGCAGTGGGATGCTGTATGATCAGGAACGTGTAGATCGGACCTTGTTGAAGGTGATTCCACAAGGAAGCTGTAAGAGAGATCAGGTCAATACAATGCTTCAGGAGTATCTGGTAAACCATCTGCCCCTAGCTGTAAACAATGACACAAATGAATTCACCATGCTAGCGCCTCTTGACCCCCTGGGCCACAACTACGGAATTTATACGGTGACAGACCAGGATCCCCGCACAGCCAAAGAGATTGCACTTGGACGTTGCTTTGATGGCACTTCTGATGGTACATCTCGTGTCATGAAAAGCAATGAGGGCGTCGCACTGACGTTCACCTGTGGAGATCGTGAGGTGACACGCCAGAGTGCCTTCCAGGCCCTGCAGAGTTCTCAAGGTCAGACCGTAACGAGCGTTGTGAGAGAAGGCAAGCAAAACCGACGCCGGCAGAGGGCCAATGCACCCCGCAGCAGCCGTAGACGTAGCACCAGAAATCCTTCAGGACGACGCGCAAAAGCCACAATCTAAACACTGAAGGCAGTACGTGGAAAGAAAATCATCACCTGCAATGGAGATCGGAGTGGATAGGGTTAACCTTGTTTTGATAAACATTTTATAGACGTTTCTTCCAAATTAAGTGAAGATGTTGACGTTTCTTTCAAATTAAGTGAATACACAAAGCTAGGCCTATTTCTAATAGGATAAATATTTGCATtgttttactgtacatttttatCTGTACTGTGGTAAATATTTACTTGAAACTGTAAATAGAGTATTTATTACATATGCCTTAACTTTGTAATCAGGGTGTTATTGCATTTAAGTTTCTTTCATTGATGTTGTAAACAAGAACAGAAACACAACTTATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39019 lncRNA upstream 44911 23516517 ~ 23517263 (+) False igdcc3
TU39015 lncRNA upstream 140436 23418711 ~ 23421738 (+) True G29378
TU38969 lncRNA upstream 188078 23369180 ~ 23374096 (+) True LOC120555420
XR_005638711.1 lncRNA upstream 190277 23369342 ~ 23371897 (+) False LOC120555420
TU38953 lncRNA upstream 267767 23286897 ~ 23294407 (+) True G29323
TU39052 lncRNA downstream 27902 23596452 ~ 23599250 (+) False G29410
TU39057 lncRNA downstream 27902 23596452 ~ 23599696 (+) True G29410
TU39058 lncRNA downstream 31951 23600501 ~ 23600768 (+) True G29411
TU39069 lncRNA downstream 47046 23615596 ~ 23616946 (+) True G29421
TU39083 lncRNA downstream 152647 23721197 ~ 23722650 (+) True G29432
XM_039795792.1 mRNA upstream 45418 23443149 ~ 23516756 (+) True igdcc3
XM_039795219.1 mRNA upstream 207973 23345487 ~ 23354201 (+) True tmem276b
XM_039795217.1 mRNA upstream 218966 23328610 ~ 23343208 (+) False slc39a13
XM_039795218.1 mRNA upstream 218966 23328613 ~ 23343208 (+) True slc39a13
XM_039794304.1 mRNA upstream 307589 23228908 ~ 23254585 (+) True lgr4
XM_039795600.1 mRNA downstream 299404 23867954 ~ 23870221 (+) True terb2
XM_039794767.1 mRNA downstream 302507 23871057 ~ 23875520 (+) True sord
XM_039795427.1 mRNA downstream 402148 23970698 ~ 24071149 (+) False syt7b
XM_039795426.1 mRNA downstream 402151 23970701 ~ 24071149 (+) True syt7b
XM_039795428.1 mRNA downstream 402153 23970703 ~ 24071149 (+) False syt7b
TU38916 other upstream 425147 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 569672 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 680522 22764719 ~ 22881652 (+) False ankrd11
TU38802 other upstream 680808 22867720 ~ 22881366 (+) False ankrd11
unassigned_transcript_140 other upstream 1014902 22547201 ~ 22547272 (+) True trnag-ucc_7
TU39086 other downstream 158462 23727012 ~ 23731706 (+) True G29433
XR_005638781.1 other downstream 667174 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 882762 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 882824 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 2396129 25964679 ~ 25964758 (+) True LOC120556589

Expression Profile