RNA id: TCONS_00073587


Basic Information

Item Value
RNA id TCONS_00073587
length 807
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_037401
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45112496 ~ 45122990 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTTAATTGAAAGAATGGCCGCAGAACACATCCGCGTCGTTTCATTTCTCTGCTTCTTCagAATGACTACACTTATATTTTCCACAGATTCAGCCAAAACACACCTCGATGTTCTATTACTATTGAAAGAATTACCAGTCACTTTTATCTTGGATTGGttgggCTTCAAAGCGATTAGTCACAGGACATTTACGGTCTTTCAGGATGAAACAACAGGGTCGCGGGTGTTTGGAGCTGGCCAAGCATCTGCCATTGAGATGAATGGGAATTCGAAAGGACATTTTCTCCAGgcatatattttaCTGAGCCTCTTACTGAGGAGGGAGTACCGCAGAAAGCCATCACAGAAAGAAGCATTGCAGGAACAACTGGAGCAGTCAGCTGAGGATTCTGGGCCTGAATTagtgactgtatttacatttggcCCATGCACACTGTTAGCATTCTTGTGTTCTTGAGAGCCTTGGGATCTAATAATTCTCTCCCTGTAAACTCTTCATGGTGGCTGAAAGAACAGTGCCCGATATTTCAAATCCCTGTTTTGCTGCCAGGGAAACCGAATTCTCTGTGGTTCGGAACATTCTCTTGCGTCACTTTTAAAGAGGTGCAAATATTTGGAAGTGAGACGGCATTTACACAGATGTAGATCATGTGTTTTACAACGAACAAGCCCTCGCTCTATTTCTAGCATGTGTTGGGTGCCTGCGAGTCAGCTTAGCGTAGCTTGACAGATGTACCGGCTGCACTTTTAATTATGATGCAGGCCTGAACCCAAAACTCATTAAAACATCTTGAATAACAAAGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000144719

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075191 lncRNA upstream 67546 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00073584 lncRNA upstream 113962 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00073574 lncRNA upstream 643108 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075190 lncRNA upstream 656429 44455143 ~ 44456108 (+) True XLOC_037394
TCONS_00073565 lncRNA upstream 1232745 43800876 ~ 43879792 (+) True XLOC_037388
TCONS_00074933 lncRNA downstream 138394 45261384 ~ 45261761 (+) True XLOC_037403
TCONS_00074934 lncRNA downstream 425797 45548787 ~ 45553378 (+) False XLOC_037404
TCONS_00073593 lncRNA downstream 428078 45551068 ~ 45553378 (+) True XLOC_037404
TCONS_00075193 lncRNA downstream 742277 45865267 ~ 45879991 (+) False XLOC_037410
TCONS_00074935 lncRNA downstream 742401 45865391 ~ 45868067 (+) False XLOC_037410
TCONS_00073583 mRNA upstream 113815 44994214 ~ 44998722 (+) False XLOC_037398
TCONS_00073581 mRNA upstream 273389 44832032 ~ 44839148 (+) True XLOC_037396
TCONS_00073578 mRNA upstream 287118 44722205 ~ 44825419 (+) False XLOC_037395
TCONS_00073580 mRNA upstream 287192 44722267 ~ 44825345 (+) True XLOC_037395
TCONS_00073577 mRNA upstream 288037 44721808 ~ 44824500 (+) False XLOC_037395
TCONS_00073588 mRNA downstream 104038 45227028 ~ 45540996 (+) False XLOC_037402
TCONS_00073590 mRNA downstream 305051 45428041 ~ 45540996 (+) False XLOC_037402
TCONS_00073591 mRNA downstream 370351 45493341 ~ 45541367 (+) False XLOC_037402
TCONS_00073594 mRNA downstream 482420 45605410 ~ 45623647 (+) False XLOC_037405
TCONS_00073595 mRNA downstream 482427 45605417 ~ 45667487 (+) False XLOC_037405
TCONS_00073586 other upstream 48268 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073585 other upstream 115114 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073582 other upstream 180244 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073566 other upstream 1256927 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073561 other upstream 1337172 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073589 other downstream 104111 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073592 other downstream 417487 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073600 other downstream 698479 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073602 other downstream 1298037 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073638 other downstream 4662330 49785320 ~ 49785437 (+) True XLOC_037435

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_14095330_14128580.mRNA True 2407 mRNA 0.39 5 CI01000009 14093645 ~ 14128582 (+)