RNA id: XM_039795674.1


Basic Information

Item Value
RNA id XM_039795674.1
length 5365
RNA type mRNA
GC content 0.47
exon number 32
gene id phka2
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18677341 ~ 18698498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttttcttcttttcagaaTGGATGTACAATTCCTCACGTACGTACTATGCACGCTTTCTCTTTCTGTGAATTCTCACGTATTGTCACCTTTAACGCCTGACCCTCATCCAGCTGTTTGACACAGGGCTGCGCGcgcgtgagtgagtgtgtgtgtgaatcgtGTGAATACAGACGTTTGAGTGTAACGTCAAATCTGTGTCGTCACGGCTAGCAAGCTGTAGCCGAGCAGCAGCCTCATCAGAGCGGTGAAGCTGTCAGATCAATACTGTCTATGGATCAATCCCGCGCTGCAGGAACTGGACGGATGGATCAGCTGCGTGTGATGACTGATCAGTGAGGATGAGGAGCCGCAGTAACTCAGGAGTGAGGCTGGATGCCTATGCCAGGCTGGTCCAAGAGACTATCCTGTGCCACCAGaaCCCGGTGACAGGACTTCTGCCTGCCAGTGCCCAGAAGAAGGATGCCTGGGTGAGGGATAATGTGTACAGTGTCCTGGCTGTGTGGGGGCTGGGCATGGCTTACCGCAAGAACGCAGACCGTGATGAAGACAAGGCCAAGGCCTACGAACTGGAGCAGAGTGTGGTAAAGCTGATGCAGGGACTTCTGCAGTGCATGATGAGACAGGTGGCCAAGGTGGAGAAGTTCAAACAGACCCAGAGTACAAAGGATTGTTTGCATGCCAAATATGATACTCCGACCTGTGCCACAGTGGTCGGGGACGACCAGTGGGGCCATCTCCAGGTGGACGCCACCTCCATTTACCTGCTGATGCTGGCACAGATGACAGCCTCAGGTCTTCGCATCATCTCAAACCTGGATGAGGTGGTCTTCATCCAAAACCTGGTCTTCTACATAGAGGCTGCCTACAAAGTGGCGGATTATGGGATGTGGGAACGAGGTGACAAGACCAATCAAGGCATCCCCGAGCTCAATGGCAGCTCTGTAGGAATTGCTAAGGCGGCTCTGGAGGCCATAGATGAGCTGGATCTTTTTGGTGCCCATGGAGGGCCAAAGTCAGTCATCCATGTTTTGCCTGATGAAGTGGAACATTGTCAGTCCATCCTGTGCTCCATGCTGCCAAGAGCTTCAACTTCAAAGGAGATAGACGCCGGCCTTCTGTCTGTCATTTCCTTCCCTGCTTTTGCTGTAGAGGATGCTGAGCTGGTGGCCATTACTAAGTCGGAAATCATAACAAAACTGCAGGGTCGCTATGGCTGCTGCCGCTTCATCAGGGATGGATATCGTTGTCCAAAAGAGGACCCATCTCGGCTGCACTACGATCCTGCAGAGCTCAAGTTGTTTGAGAATATCGAATGTGAGTGGCCCGTGTTCTGGACTTATCTCGTCCTTGACGGTATCTTTGCTGGAGATCAAGTGCAGGTACAGGAGTACCGTGAGGCACTGGAAGGAGTTTTGATCAGAGGGAAGAACGGCATCAAACTGTTGCCCGAACTTTATGCTGTACCTCCTGACAAGgtggaggaggagtaCAGGAATCCTCACTCAGTGGACAGAGTGGCCATGGGGCAGCTGCCGCACATGTGGGGACAGTCGCTCTACATCTTGAGCTGTcttctggccgagGGTTTTTTAGCACCAGGAGAGATAGATCCTCTCAACAGGAGATTCTCGACAAACTTCAAGCCAGATGTTGTGGTACAAGtttgtgTTCTAGCAGAATCGGAGGAGATCCAGCAGTTGTTAAGTGATCACGGGATCAAGGTCCAGACAATGTCAGAAGTTCTGCCTATCAGGGTCATGCCTGCTCGCATCCTGAGCCATGTTTATGTCAGACTGGGGAACTGCAAGAAACTTAATTTGAGCGGGAGGCCCTACAGACACATTGGAGTTTTGGGAACATCCAAATTCTACGAGATCAGAAATTGCTCTTATATATTCACCCCCCAGTTTCTGGATCAGCACCATTTCTACCTGGCACTGGACAACCAGATGATTGTGGAGATGTTACGAACAGAGCTGGCCTATCTCTCCTCTTGCTGGAGGATGACAGGACGGCCCACACTCACTTTCCCCATCACCCACAGCATGCTGGTTGAAGATGGAGATGGAATTGATTCGTGTATCCTAGCAACCCTCCGAAAACTACAGGATGGCTATTTTGCCGGAGCGAGGGTGCAGATGTCAGACCTATCCAGTGTCCAGACCACTTCCTTTCACACTGACCTCAGCTTCCTGGATGAAGAGAAGGATGACAGCTTACTCGAGGATGAGGAGGATAATGATGAATATGGAGAGGAATATTACAACTGTAGGCCCTCAGAGGGCTCTAAAGACATGTTTGACCAGTACCTCACACAGCTCCTCCACAGCACCAATACCAAGTCCCATCTTCCTCCCATCCAGAGTGGGCAGCACCACGTCTTCAGTGCGGAACACAGCACCAGAGACATCCTGTCTTTTATGGCCCAGGTTCAGGGCCTGAACATGCCCAAGTCTTCCATGTATCTACCTGTGACTCCTGTTAGGAACAAACGCCGCAAAGGTCTCAACTTACTTGAAGTTTCTTCTCATTCTCAGCATGGCCCAAATGTAAAGCAGCACAAGTCTCACAGTGCTGCTGACCTGCACCTGCCTCGAGACTCCcagggcaacacagattttgcaGCGTTGGTGAGGCAGCTGAAAGAGTGTCCGACCCTGCAAGACCAGGCTGACATACTCTACATCCTTTACGTGATGAAAGGGGCTGATTGGCTGGTGGAGTTGTCAGTTCCTGGGCAGGGTGGAGTCAGCGTGCGTTCCCTGCTGGAGGAGCTGTATGTAGAAGCTGGAGCCTGCAAAGAGTGGGGACTCATCAGATACATCTCCGGGATACTACGCAAGAGAGTGGAGGTCCTCGCTGAGGCCTGCACAGATCTTATTTCCCATAACAAGCAGCTGACTGTAGGTCTACCTCCTGAGCCCAGGGAAAGAGTCATCACTGTTCCACTTCCTCCTGAGGAGTTGAACACTCTCATCTATGAAGCCAGTGGTCAGGACATCAGTGTAGCTGTACTCACGCAGGAAATCATGGTCTATCTAGCCATGTACATGCGCTCCCAGCCTGCTCTCTTTGGGGACATGCTCCGGCTCAGGATAGGACTCATCATGCAAGTGATGGCCACTGAGCTGGCTCGCAGTCTGCACTGCTCTGGGGAGGAGGCGTCTGAGAGTTTGATGAGCCTGAGTCCTTTTGGCATGAAAAACCTGCTGCATCACATCCTCAGTGGCAAAGAGTTTGGGGTGGAGAGGAGCATGCGCCCAATCCAGTCAACAGCCACTAGTCCTGCCATCTCCATCCATGAACTCGGTCACACTGGAGCCACCAAGACTGAACGCACAGGAATACACAAGCTGAAGAGTGAGATAAAACAGATCTTCAGCGGCGGTCTTTCCTTGAGTAGCAATGCCACTTCTCCTCGCTCCACGCGCTGCAGCAGCCCCTCCACCCCCAGTGGGATCCTGTCCCCTGTGGGCCCCGGTCCAGGAGATGGACAGCTGCACTGGGAGGAGAGGCAAGGCCAGTGGCTGAGGCGACGCAGGCTGGATGGAGCTATCAACAGAGTACCAGTTGGTTTCTACCAGAAGGTCTGGAAGATCCTGCAGAAGTGCCATGGCCTATCCATCGATGGATATGTGTTGCCCTCGTCTACTACAAGAGAGATGACAGAGGGAGAGATCAAGTTTGCGGTGCAGGTGGAGTCTGTCCTAAACCATGTCCCTCAACCAGAATACCGGCAGCTACTAGTGGAGACTGTGATGGTTCTTGGCCTGGTAGCTGATGTGGACGTGGACAGCATTGGTAGCATTATACATGTGGACCGCATCCTGCATCTGGCCAATGACCTGTTCCTCAGTGACCAGAAATCCCACAGTGCCAGTGATTACTTCCTTGAGAAGGACCCAGCGACCGGAATCTGCAACTTTTTCTACGATAGTGCCCCCAGTGGCAGCTATGGCACCATGACCTACCTGTCCAAGGCAACGATCACTTATGTCCAAGACTTCCTGCCAAGCTCCAGCTGCCTGATGCAGtgaaacagtaaactgaacacGTGAAGAGACATGTTTTATTATGAGTAAAGGATCATCAAGTTAAAGGCAGCAAAGCTTCTCATTTTCAGCTGATACAGTCCATGTGGTGCTTGTGAGTATTCAGTCTTCAACTCTGTAGCTGTCATACACTGACGTAACATCATAGCTTGGCAGCTGATTTCAAGCTATTACaagaatttattttttctgtGTCAAGTCTGGACTGTGAACTTATTTATTACTTAAACATTTTGCTCAAATGTGTGTTTTGGACTTACAAacgttttgtgttgtgtgtgtgagaatataTGAACAGTTAACTGTCTTGTAATTAAATGTGTCATATGGTATAATTTTACTAATAATAGTTACTAGGGTAAGCATTTTGATCATTTGTGCATACAAATGATTATTTCCCTTAAACCAATCAGTGTATTTAAATTTTCTGCcgctattacttttttttgcttctatatatctatatttagtaatataataatttattgttcgATTGTAATGGCTGAGCTTAAATACGtccaaaaataatacaatataaatCATAAAATCAATTTGTTCCCTCAAATTACTTATTCTCCTTATTCCTCTTATTAATTTGTACATATGcattttttaatcccttttgtAGCTTCCAGGCTCTTTATAATTCAGTGTTGATGATACTGAAACTTGTAATTTGTATTAGTTGTAGTCcttttgtctttgtgtatgtgttgaaATTAATGGAAAATAATCCATCTGTCCACATATGAATGTCACCCCAAGGTTTTGCTACAGACATAGTGAGTCATTTTACACGTACCTCAACATATTGACGGTTTGTTCATTTACCTACAGTGAAGATAGGTTTTTTTCCCCTGTATGTTGGGGTAAAAGTctgttttaatatatatatatatatatatatatatataaaagtttggacacactttcttaTTCCAGTGAATGGGAAAGTGTTTTTAAACCTTTGACTGGTACTATATATAGAGTATATGCATGATGTATACGTAAAGAAATGGCAGTGCAGGAAGATATTTGTAAAGTACTAGAGAGGTCCAGAGTATGTTGAATAGGGTCTTTGTAAGTCTGAGAagcaaagaaaggaaaaaaagttttaaataacTTTCATCCCAATACTTGATTTTGAAAGCAAAATGGCAGGAAGCagtaaaatattgatatattttaaCCTTCTTTAATGCTAACCCAAACCCTGAAATATTTGCATTTacttaaaactaaaactaaaatagaaagaattaaaatatatgttggcatatataattattttactattgtaatacattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37505 lncRNA upstream 61547 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 67478 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 232060 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 496155 18004828 ~ 18181201 (+) True LOC120555993
TU37361 lncRNA upstream 758160 17918900 ~ 17919196 (+) True G28083
XR_005638784.1 lncRNA downstream 147772 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 355627 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 359049 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 373323 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 384710 19083207 ~ 19087001 (+) True LOC120555697
XM_039795194.1 mRNA upstream 6368 18664507 ~ 18670988 (+) True zrsr2
XM_039795743.1 mRNA upstream 13366 18659862 ~ 18663990 (+) True LOC120556269
XM_039795745.1 mRNA upstream 13366 18660644 ~ 18663990 (+) False LOC120556269
XM_039795134.1 mRNA upstream 34557 18639282 ~ 18642799 (+) False LOC120555930
XM_039795069.1 mRNA downstream 22872 18721369 ~ 18728722 (+) True rs1a
XM_039795071.1 mRNA downstream 22872 18721369 ~ 18728722 (+) False rs1a
XM_039795647.1 mRNA downstream 71885 18770382 ~ 18797783 (+) True scml2
XM_039795648.1 mRNA downstream 71885 18770382 ~ 18797783 (+) False scml2
XM_039795649.1 mRNA downstream 78507 18777004 ~ 18797783 (+) False scml2
TU37478 other upstream 108876 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 934622 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3190935 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3230964 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5439537 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 788749 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 799241 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 799596 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 813859 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 2012607 20711104 ~ 20761147 (+) True G28770

Expression Profile