RNA id: TCONS_00073588


Basic Information

Item Value
RNA id TCONS_00073588
length 2457
RNA type mRNA
GC content 0.56
exon number 11
gene id XLOC_037402
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45227028 ~ 45541367 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGTGATTACGCGCGCACAGCCAATTGCAGCGTGTTTCGGCAACCACGTTGCGCGCTACCGACGGGCGACCCCGCGAGAGTATTCTAGGCCGCTCGTGTGATCAAACAGATCCACTCCATTCCCGGGAACATCATCGAGATTAGAGGTGGGCTCTCAACTTTATTCCAATGGCGGACGGGAGTCCTTTGAATCTGTATTGAGGTGCCGATCGCCGCGTGCACACGCGAAGCAGTGGAGACTCGCAGCAGGACGACCTTATCGAAGGCCGTTAGAGATCCAGAACCATCCGCTGCTGTATAATAGCGGTGTGGCTGTGGCTCAGCAAGCGCAGGGCCAGTCGAGACGTTTGACCATCATGGATGTTGATGAGGAAGAGAACATGAGTTCATGCAGCACCGACGTAAAGGAAAACCGCAACCTGGACAACGTCTCTTCTAAGGAGGGAGCTGGCCTGGTGGAGCAGCTCCCGAATGGTAGTGGAGGAGGGGGTCGCAAGCGCCCTCTGGAGGAGGGCAACAATGGCCACTCGCACTCCAAATTCAGACCCAAGAAACGTAAGAAAACCCCAGGGCCGGTTCTGCCCAAAAATGCCCTGATGCAGCTCAATGAGATCAAACCAGGTTTGCAGTACAAGCTGCTCTCGCAAACCGGCCCAGTTCACGCTCCAGTCTTCGTCATGACCGTCGAGGTTAATGGGCAGTTGTTTGAAGGCTCTGGGCCTACAAAGAAAAAGGCCAAATTGAATGCTGCAGAGAAGGCCCTGCGATCCTTTGTGCAGTTCCCAAACGCATCCGAGGCCCACCTGGCCATGGGCCGAACGCTCACAGTCAACACTGATTTCACCTCCGACCAGGCTGACTTCCCTGACATGCTCTTCAACGGGTTTGAGACGCCGGCACCGCCTGAGGAAACGTTTTTTCTGGGTTCCAACGGCAACGGCTCCTTAAACCCGCTGGGAGAGTATCCCGTTCCTCAGGCGGCAGGTACAAACAGCCTCGTGCAGGCGCCGCTCCCGCCGCCCTCCTCCTTCGCCTCCTCGGCCAGCGGCAAAAACCCTGTCATGATCCTCAATGAGCTACGGCCGGGCCTCAAGTATGAGTTTGTGTCAGAGAGCGGGGAGAGCCATGCTAAGAACTTTGTGATGTCGGTGACTGTGGACTCGCAGATGTTTGAGGGATCGGGGAGAAATAAGAAACTCGCGAAAGCCCGAGCAGCCCAGGCAGCTCTGTCATCGCTCTTCAACATGCAACTGGACCAGACCCCGTCCCGACAACCCATCCCGAGGGAGGGCCTACAACTGCACCTGCCACAGGTTCTTGCTGATGCTGTTTCTCGTCTGGTAGTGGACAAATTCAGCGAGCTCACAGACAACTTCACATCTCCACACGCACGCCGGAAAGTTCTAGCTGGGGTCGTTATGACTACAGgCACTGATGTGAAGGACGCTCAGGTCATCTGCGTCTCCACAGGAACCAAGTGTATAAACGGCGAGTATATGAGCGACCGCGGCCTGGCGCTCAACGACTGTCACGCTGAAATCATTGCTCGTCGTTCCCTCATCAGGTATCTCTACATGCAGCTGGAGCACTTCTTAAGCAACAATAAAGAAGAGCACCAAAAGTCCATATTCATGCAGTGTGAGAAGCGCGGCTACAGACTGAAGGACAGCGTTCAGTTTCATCTGTACATCAGCACCTCACCCTGTGGAGACGCTCGAATCTTCTCTCCTCACGAGGCCGGCGTCGAGGATCAGGGAGACAGACACCCGAACCGGAAGGCGAGAGGTCAGCTGAGGACCAAGATCGAGTCTGGCGAGGGAACGATCCCGGTGCGCTCCAGCAACACCATACAGACGTGGGATGGGGTCCTGCAGGGCGAGCGGCTGCTGACCATGTCATGCAGTGACAAAATTGCAAGGTGGAACGTGGTGGGCATCCAGGGATCCCTGATGAGCTACTTCTCCGAGCCCATCTACTTCTCCAGCATCATCCTGGGCAGCCTGTATCACGCAGATCATCTGTCCAGAGCAATGTACCAGCGCATCGCAGACATCGAAGACCTGCCGCAGCAATTCTCCCTCAACCGGCCCCTGCTCAGCGgaATCAGTAACGCTGAGGCCCGTCAGCCAGGAAAGGCACCAAACTTCAGCGTGAACTGGACGGTGGGAGATCAGGCTCTAGAAGTCATTAATGCCACCACAGGCAAAGATGACATGGGCAGAGCATCACGACTCTGCAAACACGCTCTCTACAGCCGCTGGGTCAGACTACACTCAAAgCTCTCACCAACTCTGCGAATCAAAGTGCCCAAGCCCAGCTCGTACCATGAAGCCAAACAAGCAGCAGTGGAGTATCACACGGCGAAGCAAACGCTCATCAAGGCCTTTCACAAAGCCGGCCTGGGAGCCTGGGTGAAAAAACCCATAGAACAGGACCAGTTCTCACTGAACTCTTGA

Function

GO:

id name namespace
GO:0006382 adenosine to inosine editing biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004000 adenosine deaminase activity molecular_function
GO:0008251 tRNA-specific adenosine deaminase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0003726 double-stranded RNA adenosine deaminase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-15 Predicted to enable double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and tRNA-specific adenosine deaminase activity. Predicted to be involved in RNA processing and adenosine to inosine editing. Predicted to be active in cytoplasm and nucleolus. Is expressed in blood island; blood vessel; central nervous system; and immature eye. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human ADARB1 (adenosine deaminase RNA specific B1).

Ensembl:

ensembl_id ENSDART00000185579

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075192 lncRNA upstream 110187 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00075191 lncRNA upstream 182037 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00073584 lncRNA upstream 228453 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00073574 lncRNA upstream 757599 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075190 lncRNA upstream 770920 44455143 ~ 44456108 (+) True XLOC_037394
TCONS_00074934 lncRNA downstream 7791 45548787 ~ 45553378 (+) False XLOC_037404
TCONS_00073593 lncRNA downstream 10072 45551068 ~ 45553378 (+) True XLOC_037404
TCONS_00075193 lncRNA downstream 324271 45865267 ~ 45879991 (+) False XLOC_037410
TCONS_00074935 lncRNA downstream 324395 45865391 ~ 45868067 (+) False XLOC_037410
TCONS_00075194 lncRNA downstream 337663 45878659 ~ 45884134 (+) True XLOC_037410
TCONS_00073587 mRNA upstream 104038 45112537 ~ 45122990 (+) True XLOC_037401
TCONS_00073583 mRNA upstream 228306 44994214 ~ 44998722 (+) False XLOC_037398
TCONS_00073581 mRNA upstream 387880 44832032 ~ 44839148 (+) True XLOC_037396
TCONS_00073578 mRNA upstream 401609 44722205 ~ 44825419 (+) False XLOC_037395
TCONS_00073594 mRNA downstream 64414 45605410 ~ 45623647 (+) False XLOC_037405
TCONS_00073595 mRNA downstream 64421 45605417 ~ 45667487 (+) False XLOC_037405
TCONS_00073597 mRNA downstream 64544 45605540 ~ 45667259 (+) False XLOC_037405
TCONS_00073596 mRNA downstream 64544 45605540 ~ 45667259 (+) True XLOC_037405
TCONS_00073598 mRNA downstream 139806 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073586 other upstream 162759 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073585 other upstream 229605 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073582 other upstream 294735 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073566 other upstream 1371418 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073561 other upstream 1451663 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073600 other downstream 280473 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073602 other downstream 880031 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073638 other downstream 4244324 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 4548004 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 5259361 50800357 ~ 50800473 (+) True XLOC_037446

Expression Profile

//