RNA id: XM_039795677.1


Basic Information

Item Value
RNA id XM_039795677.1
length 2615
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC120556226
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18699345 ~ 18705558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCAATCCCATCTGGGAGTTCAGATGGGGCTCTTGGCAGCACTGGTCGCTCTGCTCTGCATCTATGCTCCAGCGTGGGGAGCTGAAGGATGCAGCACTTTTAGACACCTGGAGAACGGGCAGACGTTTTTTCGTTACGGTGGACTGCTGGTGATCTTCCGCTGTCATCCTGGCTACAAGCTCCATGGATACAAAACCAACAGCTGTGTGTCTGGGCGCTGGTCCCGGGACACCCCAGTCTGTGTCGGCTCCGGCTGCTCCAACCCAGGGCGGCTTACCCACGGGACGAGCAGCATGAATGAGGACGGCTCCTGGGCAGTGTTCAGCTGTGATAGTGGCTTTCGGCTACACGGGCCCTCAATGTTATACTGTAAGGGCCTCACCTGGAACAGCACAGAGCCTGTATGCAAAGAGTACGACATGATGAGCTCGGTCTCAGGTGTCAATGTGCAAAAGCCAAACATACACCAGAACCTCCAGGCTGCTGTAATTCTGAAGACCCAGCAACAATCCCACTACAACACCCTCGCTAATACCGCTTCCAAAGAAGTGAACCTCAAATTTGGCTTGCTGTCTAACACAGCATCCGAAATGTCCAACAGGGAGAGGATTAAAGTGACTGTCCCAAAAgtccaccagcagcagcatgttCAGTTTCCCAATTTTAAAGTCAAAGATGGAGTCCAATCAACTCATCATGAAGAAACAGGAACTGGGAGGCATGACTTGGAGGCAGAAAAGGTGGACAAAGTTGCCTCTAAATCACATTGGTCTACTACTGTCTCATCTGCCTTATCATTAGTGTCAGGAACAGAACAATCAACATCCTCACCAACATCATTTTCAACAGCCCATACACCAGCTATGGCTGCTGTCTCAAATACTGTGATGTTTGTGCCAACTTCCCCACTCCACCACATGAAATCTGCACTTCCTGTGTCTGGCAGGGAAAAAGTGCTCAAGTTTGGAGAACTTGTCACTTCCCGGGATGACGCGACTCTCTCTGTAGTAGTAACAGGCTCTTCACAAACTGCAGATGAAGACCAACAGGCTGAAACTGTCTTCCAGTATCCTCCTTTGTCTCAGCCTGGGTCTGTAGATAAAAGGGAGCCCACCGAGACTTCAACAACTTTATCTTCTTCTGTTAATTTAATTTCTGACAGTTCTACCTCCACTTCATCACCTGCTTCCTCCTTATCAGCCCCCCTTCCCTCCTATTCTGCCTCAACTTCCTTAAATTCCAGCTCCTCTCAGTCCAATATGAAAACACAGCTGCCTTATGTTCCTTCAAACACCTTTACCACCAGTGAGCCAAGATCTCACCGGACTGAAAACCACAACGCCACCTTCAAACCACCTCTGCTGTCTCTGAGCCTGAGCAGACGACCCATATGCACATACCCGCCTGTGCCCGCTCACGGGACCTTCTACTTTCGTAATGTAGAGAATCCAGGTCCCAGAGAGAACagacattacatacagtatgccTGCTACCCTGGCTATACgctggctcatggagacatacACAGCTACTGCCAGCATGGGGGCGCCTGGAGTGGAATCACACCTGTTTGTCTGGAGTTGACACCTTGTTCAGTTAACAACGGAGGCTGTTCCCAGCTGTGCTCTCACTCCCAGCACTACAACCAGAGCTCCAACCAGACCCAAACCAGAACTCAATGCCACTGTAGAGCTGGATTCACTCTGCTGGATGATGGGCAGACGTGTCGAGATTTAGATGAGTGTGTGGAGGGGCAACACCAGTGTCAGCAGAAATGCATCAACACATTTGGTTCCTTCAagtgcagctgtgatgatgGCTATCAACCAGCTCATCAGCAGACCTCctgcacagATGTGGATGAGTGCCTGCTGCCAGCAGCTGTAACAGGCTGTGTGTTTGGCTGTGTTAACACCCCTGGGAGCTTCTACTGCCAATGTCCTGTTGGCTACAGCCTTCAGACTGCAGACAGCCACTGCCAAGATATAGATGAGTGTGCTGTTAATCAGGGGCTCGGGCCGTGTACGGAGCAGTGCCACAACTCCCCAGGATCCTACCGATGCTCCTGCTCGTATGGGCACATCTTAGCCGGAAACGGACACAGCTGCATCGCCGAGTGTCCACCTGGATACAGGAAGGAACCAATAACAATACCACCTGAGAATCCAACTGCACAAACTCTTAGGGAGGAGTGTGTagATATAAATGAGTGCCAGGAAGAGACCTGTGAGTGGCAGTGTGTGAACCTGCCAGGCTCTCACCGCTGCATCTGCCCCAGAGGATACACACTCCACAAAGATGGCCAACGCTGCAAAGaCATTAATCAGTGCAGCCGGAAGAATGGAGGGTGTTCCCACCTGTGTGTGAACCAAAGAGGTGGCTATAAATGTGTCTGCCCAGCCTCTCATCGTCTCTCACCCTACAGCTGGAAGAAATGTGTGCCAAGAACAACAGCGAACACTGCTATCTAAACATATGAGCTGCCTGTCCAAGTTGTTATGAGCAATAGATTTCAGCTGGTTCTTCTTTAAAACTAGCCTATTTTCCTATTGATTCAGAAATGACATGacttaattattaaattatccattttaattgttgtttttaaattgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37674 lncRNA downstream 46904 18650051 ~ 18652441 (-) False LOC120556268
TU37650 lncRNA downstream 130268 18568101 ~ 18569077 (-) True G28309
TU37640 lncRNA downstream 141126 18542458 ~ 18558219 (-) False G28302
TU37639 lncRNA downstream 141126 18555965 ~ 18558219 (-) True G28302
TU37628 lncRNA downstream 201256 18497849 ~ 18498089 (-) True G28291
TU37814 lncRNA upstream 300350 19005908 ~ 19008421 (-) True G28429
TU37827 lncRNA upstream 331290 19036848 ~ 19037059 (-) True G28437
TU37828 lncRNA upstream 347766 19053324 ~ 19053869 (-) True G28438
TU37829 lncRNA upstream 348539 19054097 ~ 19054692 (-) False LOC120555695
TU37832 lncRNA upstream 357770 19063328 ~ 19063839 (-) True G28442
XM_039795195.1 mRNA downstream 22856 18671352 ~ 18676489 (-) True ap1s2
XM_039795742.1 mRNA downstream 40686 18650029 ~ 18658659 (-) True LOC120556268
XM_039795133.1 mRNA downstream 60124 18607469 ~ 18639221 (-) False homer2
XM_039795132.1 mRNA downstream 60526 18607469 ~ 18638819 (-) True homer2
XM_039794523.1 mRNA downstream 114751 18575060 ~ 18584594 (-) True LOC120555642
XM_039794056.1 mRNA upstream 732 18706290 ~ 18718603 (-) False ppef1
XM_039794055.1 mRNA upstream 732 18706290 ~ 18718603 (-) True ppef1
XM_039795068.1 mRNA upstream 23218 18728776 ~ 18767719 (-) False cdkl5
XM_039795067.1 mRNA upstream 23218 18728776 ~ 18767719 (-) False cdkl5
XM_039795066.1 mRNA upstream 23218 18728776 ~ 18767719 (-) False cdkl5
TU37603 other downstream 278846 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 315703 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 478795 18218122 ~ 18220550 (-) True G28121
TU37147 other downstream 1186177 17509950 ~ 17513168 (-) False G27925
TU37697 other upstream 13814 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 354197 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 418008 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 418008 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 2875484 21581042 ~ 21583498 (-) True G28933

Expression Profile