RNA id: XM_039795684.1


Basic Information

Item Value
RNA id XM_039795684.1
length 2585
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC120556233
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18471714 ~ 18482023 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACACAATCCTTATTTGCACATTCCCCATTTTTTTGCAGGGCATGTGGCTTTTAAACGAGAAAACATGATGGAGATGTGTTTGATTTCAGTAGGTTTAGCAAGTATCCTTATCATACCGTTCGCACTCAAAACTTTGTTCCCTTATGTTTGGATGGATATTCTGTATTTCGGGGATCTACTGCGGATTTTAGTGAAGTTTGTGTCGAGGCGAAGAAGGAGACCTTCCTTCTTTGTTTTGGATCGTTTCTTGGAGCAGACCGCTGCGCATCCAGACAAGCCGTTCAttgtgtttgaaaatgaaaactacTCGTACGCTGACTCAGATCAAATGAGCAACAAAACAGCCGACGCGCTTCAGTCTCACCCTGGGTATAAGCCTGGGGACACCGTCGCACTTTTTATGGGGAATGAACCCGCCTTTCTGTTTACCTGGCTGGCCTTGGCTAAATTAGGCTCTCCTGTGGCTCTTCTCAACCACAACATCCGCACCAAGTCTCTGCTGCACTGCTTTAACTGCTGCGAGGCGAACGTGTTGATCGCAGCCTCAGAGCTAAAGGAAGCAGTGGAGGACGTGCTGCCCTCACTGATAGAGAAGGGCGTCACCATCCTCCTGATAACCAAACACTGTGACACACCTGGGATTGAGAGCTTCTCTGATAAAGTGGACAAGGCATCAGACACCCCGCTCCCTCGATCCCTCAgatcacacatcacatacaaaaGTCCTGCAGTGTATATTTACACCTCTGGAACTACAGGTCTCCCAAAGGCAGCTGTGGTCAACCAGAACCGCCTCTTAACAGCTCTGGCTGCTTTATCTTCAAACGGTGTGATGTCTAGTGATGTCCTCTACCTCAATCTGCCTCTGTATCACACCGCTGGATTCTTTATCGGCTTTATCGGATCCATTGAGGCGGGGTCGACTATCATTTTGAAGAGGAAGTTCTCTGCCTCTCAGTTTTGGGATGACTGCAGGAAATACAATGTGACTGTTGTGCAGTACATAGGAGAAGTGATGCGTTACCTCTGTAGTACACCGAAGAGAGAAAATGACAAGGATCATAAAGTAAGGCTGGCCATTGGCAACGGTGTCAGAGCAGAGATATGGAGAGAGTTTGTCAATCGCTTTGGGGACATTCAGATCCGAGAGTTTTACGCTTCCACCGAGGGAAATGTGGGATTTGTCAACTACGCAGGAAAAATTGGAGCTATTGGACGAGTTAACTTTTTTCATCAGAAGCTGTTTCCCTTCACTCTTATTAAGTACGACACAGAGCGGGATGAACCGATTCGAGATGCTAACGGCCTCTGTGTGGAGTCGCCCAAAGGTGAGACAGGACTGCTGGTGTCGAAGATCACAGACATCGCTCCTTTCGTCGGCTACGCCCAGAATGAAGAacaaacagagaggaaaagacTTCGCAATGTTCTCAAAAAAGGAGATCTTTACTTCAACAGTGGAGACCTAATGAGGATCGATAAAGACAACTTCATTTACTTTCAGGATCGTGTAGGTGACACATTCAGGTGGAAAGGTGAGAATGTGGCCACAAATGAGGTGTCTGACATCCTGACGATCAGTGATTGTCTCAAAGAAGCCAACGTTTATGGAGTCCAAGTGCCAGGGCATGAGGGGCGGATAGGGATGGCAGCTGTCACTGTGAAGGAAGGTGCCCAGTTTGATGGAAGTAGAATATATCACCATGTGGTTAACTACCTGCCTTCATATGCCCGACCACGCTTTATAAGAATACAGAATGCCGTAGAGGTGACGGGGACTTTCAAGCAGATGAAGGTGAAGTTAGTGGAGGAGAGTTTTGATCCAGGACGTATCCAGGACCCTCTTTACATCCTTGATGATAAAGAGAGGAGTTACGTTCCGCTGAGATATCAGATCTACAGCTCCATCATATCAGGAAACCTCAAACTATAACCTCCTCTCTTCGAGTCCTCAGAGCGCATTAAGGAATTGGGACGTCCTTCAAGATGGCGAGTCTCAATCAATTTCCGGGTCAAGTGATCGAGGAGTCGAGGAGAGATATTGGGATGAACCCTTAGTGTTCAACTGTGCAGGCTTTTTAGTCTGGCTGCATTGATACTTTTAATAATGAACTTCCAGCTCAGTGACCAATCAATTGTTAATATTATATAACAATCATATTATTGTGTGTAGTAAAATAATGGGGAGACATAAACATCGTTATTAAAAGCAGTAGATGGGAATCGGAAGTGTAGGATTCATTTGTAAGGATTTGTGTCAGGGGCCGGAGTCAGCCTGCATGCAGGGGAGGGCGTTTGATAATATAAATGACATATTTACTGGCAAGTGATAATATAAATAGTTGATCTACAAGCATGAGGTTTGCTTTCCAGTAtgaggactgctgcttttactTCATTCAGTCTAATAATGGTGTTGAGAAGCATTGCTGTATGTATGGATAAACAGATAGTGTAGCTTAATGAGATGCTATTGGACTTTCTCTTAAAGGTAGTATGTACTTAACATAATCTTAACATAATGTCTTGCTTATGGGAAAGACACGAGTAACATGTAAtggtttaaaagtaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08746 SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37621 lncRNA downstream 264 18469813 ~ 18471450 (-) True G28284
TU37604 lncRNA downstream 51215 18416069 ~ 18420499 (-) False G28269
TU37601 lncRNA downstream 85106 18385531 ~ 18386608 (-) True G28267
TU37598 lncRNA downstream 89335 18381978 ~ 18382379 (-) True G28264
TU37597 lncRNA downstream 90192 18381179 ~ 18381522 (-) True G28263
TU37628 lncRNA upstream 15826 18497849 ~ 18498089 (-) True G28291
TU37640 lncRNA upstream 60435 18542458 ~ 18558219 (-) False G28302
TU37639 lncRNA upstream 73942 18555965 ~ 18558219 (-) True G28302
TU37650 lncRNA upstream 86078 18568101 ~ 18569077 (-) True G28309
TU37674 lncRNA upstream 168028 18650051 ~ 18652441 (-) False LOC120556268
XM_039794656.1 mRNA downstream 5633 18456550 ~ 18466081 (-) True LOC120555694
XM_039794653.1 mRNA downstream 20695 18439582 ~ 18451019 (-) True usp8
XM_039794654.1 mRNA downstream 20695 18440985 ~ 18451019 (-) False usp8
XM_039794635.1 mRNA downstream 111504 18335550 ~ 18360210 (-) False tmod2
XM_039794637.1 mRNA downstream 111517 18335550 ~ 18360197 (-) True tmod2
XM_039794523.1 mRNA upstream 93037 18575060 ~ 18584594 (-) True LOC120555642
XM_039795133.1 mRNA upstream 125446 18607469 ~ 18639221 (-) False homer2
XM_039795132.1 mRNA upstream 125446 18607469 ~ 18638819 (-) True homer2
XM_039795742.1 mRNA upstream 168006 18650029 ~ 18658659 (-) True LOC120556268
XM_039795195.1 mRNA upstream 189329 18671352 ~ 18676489 (-) True ap1s2
TU37603 other downstream 51215 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 88072 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 251164 18218122 ~ 18220550 (-) True G28121
TU37147 other downstream 958546 17509950 ~ 17513168 (-) False G27925
TU37697 other upstream 237349 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 577732 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 641543 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 641543 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 3099019 21581042 ~ 21583498 (-) True G28933

Expression Profile