RNA id: XM_039795690.1


Basic Information

Item Value
RNA id XM_039795690.1
length 678
RNA type mRNA
GC content 0.51
exon number 4
gene id mcee
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23012599 ~ 23014909 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGACCGTCTGTGTCGCAGGTAAATACGCTCGCCGAAAAACTCTTTCACTGTTGTTTGGTTCCGACATACAAACATGGCGTCCGCCGTGCTGAAGGTTGCAGTGGCAGGTCTTTCCAGATGTTCTCATCTCACACTCATGAGGGCACATTCAACGACATCACCCCTCCATCAGGGTGTTCCTGGATCACTGTGGAAGCTGGGGAGGCTAAACCACATTGCCATCGCTGTCCCAGACATGGAGAAGGCCACAGCTCTGTATCGGGACGTGCTGGGGGCCACAGTAAGTGACAAGGTACCCCTGCCCGAGCACGGCGTCTACACTGTGTTTGTGGAGCTCGGCAACACTAAGCTGGAGCTGCTCCATCCTCTGGGGGAGAAGAGCCCGATCGCTGGCTTCTTACAGAAGAACAAGTCTGGAGGAATGCACCACATTTGTATTGAGGTAGACGACATTAACTCTGCGATAGCCGACCTGAAAGCAAAGAACATCAGAACTCTGTCAGCAGAGCCCCGGATAGGTGCTCACGGGAAACCAGTGATGTTTCTCCATCCTAAAGACTGTGACGGTGTGCTGGTGGAGCTTGAAGAAGCATGAACATAAATGTGCCTCAAAGTTATTCTTCCAGGTCTGTTCTTGACTTCCCTGTTGTGTTGGGAATAAATTGTATGGTGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38854 lncRNA upstream 4617 23004878 ~ 23007982 (+) True G29243
TU38852 lncRNA upstream 11550 22997702 ~ 23001049 (+) True G29241
TU38774 lncRNA upstream 258954 22752468 ~ 22753645 (+) True G29176
TU38717 lncRNA upstream 411040 22548700 ~ 22601559 (+) False G29139
TU38716 lncRNA upstream 432352 22548700 ~ 22580247 (+) True G29139
TU38836 lncRNA downstream 1123 23016032 ~ 23019378 (+) True G29228
TU38839 lncRNA downstream 1123 23016032 ~ 23019378 (+) False G29228
TU38881 lncRNA downstream 6520 23021429 ~ 23024754 (+) True G29262
TU38893 lncRNA downstream 30384 23045293 ~ 23089580 (+) True G29271
TU38912 lncRNA downstream 145042 23159951 ~ 23160396 (+) True G29288
XM_039794295.1 mRNA upstream 18435 22981783 ~ 22994164 (+) True LOC120555548
XM_039794977.1 mRNA upstream 52196 22945044 ~ 22960403 (+) True LOC120555841
XM_039794978.1 mRNA upstream 52196 22945044 ~ 22960403 (+) False LOC120555841
XM_039794979.1 mRNA upstream 52196 22945181 ~ 22960403 (+) False LOC120555841
XM_039794975.1 mRNA upstream 86124 22923824 ~ 22926475 (+) False sult5a1
XM_039795190.1 mRNA downstream 90312 23105221 ~ 23156550 (+) False mettl15
XM_039795192.1 mRNA downstream 90339 23105248 ~ 23158790 (+) False mettl15
XM_039795191.1 mRNA downstream 92216 23107125 ~ 23158790 (+) True mettl15
XM_039794303.1 mRNA downstream 204280 23219189 ~ 23254585 (+) False lgr4
XM_039794304.1 mRNA downstream 213999 23228908 ~ 23254585 (+) True lgr4
TU38851 other upstream 20097 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 130947 22764719 ~ 22881652 (+) False ankrd11
TU38802 other upstream 131233 22867720 ~ 22881366 (+) False ankrd11
unassigned_transcript_140 other upstream 465327 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38307 other upstream 1609149 21396213 ~ 21403450 (+) True G28826
TU38916 other downstream 121823 23136732 ~ 23137027 (+) True G29292
TU39086 other downstream 712103 23727012 ~ 23731706 (+) True G29433
XR_005638781.1 other downstream 1220815 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 1436403 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 1436465 24451374 ~ 24454877 (+) False sox6

Expression Profile