RNA id: XM_039795696.1


Basic Information

Item Value
RNA id XM_039795696.1
length 5198
RNA type mRNA
GC content 0.48
exon number 6
gene id bnc1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7186729 ~ 7211577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTCCACGGCAACATTagaggagagaaagcagaggaggcgtgtgtatgtatgtgtgtgtgtgcatctgtgcagTGAGAGTAGAAGCACAGTGACTACTACTCTTTTTGTGGAGTGTCGgtggctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaagactaAGAAGCggagcacgtgtgtgtgtgtgtgtgtgttgttgaagGAGATGCTGCGGGGTGTGATGGCTCTTTTGCGTTAGTATTTGAGCGGACAGGAGAGTTGAAGGCAGTTGTTTTGTGGGACTCGCGGGGAATGGCAAACTCCACGGTATCCTTGGAAACCTCCGACTAAATGACAATGGCTGAGGCTATCTGCTGCACTTTGGTGAACTGTAACTGTGACAGCTTCAAGTCCGGGAAGCTGAAGAGGAGGCAGTGTGAAAACTGCAAGCATGGCTGGGTGGCACACGcCCTGAGTAAACTGAAGGTGCACCACATGTACCAGAGCAGCCAGGTGGAGATCGTGCATTCCAACGTGGTGTTCGATATCTGCAGCCTGATGCTGTACGGCACCCAGGCCATCCCCATCCGCCTCAAGATCCTGCTGGACCGCCTGTTCTCCGTGCTCAAGCAGGAGGAGGTCATCCAGATCCTCAACGCACTGGACTGGACCCTGCAGGACTACATACGGGGATACGTGCTCCAGgatgtagcagggaaGGTGCTGGACCGGTGGGCCATCATGACGTTCGAGGAGGAGATTGCCACACTGCAGCAGTTCCTGCGTTTTGGCGAGACCAAGTCCATAGTGGAGCTGATGGCTCTGCAGGACAAGGAGGGCCAGGCAGTGTTGGTTCCCAGCACTCGCACCAACTCAGACATCCGCACTTTCATTGAGCGCAACACCCCACGCACTGCTGCCAACCTCTCCACATCCAAAGTCGATAAGCTGAGCAGCAACAGCATGCACCACTTTGAGAACTTTGTCAACAGCATGGCCTTTATGCTGCCCTTCCAACTGTTAGGCTCTGTTCCTGCTCCGTTTTTGGGCTCACCAACAGGGGCACCGCCGCACCAGCACCaccagcagcaccagcagccATTCCGCGGATCAATGGAGCAGCAGACTCAGAGACGAGATGATCAAGGTCGGGATGGTCTAGGAAGGGACAATCCCCTCCCTCTTTCCCACCCTCCAGAGAGCAGCCTGCTAGGTTCCAGCTCTGTCTCATTCACTGCTGATCTAGACCAAAGCGGAGACAAGCCAATGGACAGcctctccaccaccaccacaaagATCGAGGCAGAGGACTTCTCCACTAGTGACAACTACTCGGATGGGCCATCCACGCCGTGCACACCCTCCATGAGCTCTGACGTAACCCAGATGTCACCCGAGGGCAAGCTGCGCTCTTTGGACAGGAATGGGTGCAGCGGTGGAGGGGTCTCGGGAGGAGGTGGATGCTCTTTGAAGAAAGGTCGGGTATTTTGCAATGCCTGTGAGAAGACATTCTACGACAAAGGAACTCTGAAAATCCACTACAATGCAGTGCACCTGAAGATTAAGCACAAGTGTACCATCGAGGGCTGTAACATGGTGTTCAGCTCGCTGCGCAGTCGCAATCGCCATAGTGCCAACCCCAACCCGCGGCTACACATGCCAATGAACCGCAACAACCGGGACAAAGACCTGCGGGGCAGCTTGTCTGGTGATGAGAGCTCTCAAGGAGAGAAGAGGTCTGAATATGGAACCCCCatccctgtctgctctgcagAAAGCCATAAGTCAGTGCCCAGCTACATGGTGAGCCATGTCGACACTGGCTCGAAACTCCACAGCAGCTCGTTCCCCAGCATGGGCCAGAGTGGCATCCTCTTCCCTAACTTAAAAACAGTACAGCCAGTCCTGCCTTTCTACCGCAGCCTGGTAACTCCGGCAGAGCTTGCCAACACCCCAGGCACACTACCCTCCCTACCTCTGTTATCCTCCTCCGTACCTGTCAAGCCCATCACAGCCCCTGATCCTTGCATGACAGACCCCATACCAAAGAAAAAGTCAAGGAAGTCAAGCATGCCAATAAAGATAGAGAAGGAAGTGATAGAGCGGGATGAGGAGATGGACAAGGGGAGCAGCTCTGAGGACGAGGCTCCTTTACAGGACAGGAACAAGGAAGAGTGTGACGGACGCCGAGCAGAAGGACATATGTGCGCAAGACAAGctagggaggagagaggggctTTCGTTGGGGAAGAGAAGGAAAGGGAGGGCGCCAAGCATCTGTTGGACCAATCCTTAGATACAGAAATGACAGCGAGAGAGGACAAAGATGATGAGCAAAGGCAAGCTGAAACCTCTGCACCCTCGCCCTTCCGAGACAGACTGATGGAGAATCACTGTGACAACAACTTACTCTGTCAGGAACCAAATGGCAATGAAGACAGGGAGGACAGGGATCATGCAAACTCGCTGCATGCAGCTGACAAGATTTCCGAGCTCCGATGGGATGAGGGTGAGCACAGGCTGACTAACGGGGGAGCTCTCCAGCTCATAGACCGCCAGAGAGAGGGATTGGGATTGGACAGCTGTGTAGACGACTACAGTGACTCAGGTTTGTCTCACCTCGACCCCAGCGCTGACCTGCCACACCACTGTGAGATCTGCAGTAAGACCTTTAAGAACCCCTACAGCGTCAAGATGCACTACCAAAATGTCCACCTGAAGGAGATGCACATGTGCACAGTGGACGGCTGCAATGCTGCCTTCCCCTCCCGCAGGAGCCGAGACAGACACAGTGCAAATTTGAACCTACACAACAAACTGCTGACCAAAGACTCATTCAGCCCAGCCAACACCCTATACTTGCCCTCATCCCACTGTAGAGACAGAGACTCTGTTGGCCGAGACTACTACCAAGACCAGCGGGACAGAGATCTGCCCCATCGAGACCCAACTAGCCAAACCTCTGTCATCTTCCGAGGACACAATCGCATGGGCCTGGTCTTCCCAATGAGCAAAATGTCTACTGCACCAACCAATGCTGAGACCTCTCCCTTAGGAGAAATGGAGGGATCAGGAGTAGGAGAAGGGGGTGGAAATGGGGACGATGGGGCAGTCTTGGACCTGAGCACTTCCTCCTCTGCCCCACCTCGTGGCAGCGGCAGTGCTCGATCTTCCTGGGACTCAGACGGTGCCGGTAGTGAGGAAGGGGAAGGGATTGAAGAGGATGAGGAGGCGCTCCCCATGGAGGACAGCGATGAAAGCTGCGATGGGATCGGCATGGGGAGGCCTGGGGTCGAGGAGTTGGCACTCGGGGAAGAGAGGACCCTGGGCTGTATTGGGGAGGACAAGGCGGGCTTCATAGGCGGGGGTGGATCTCCCATAACCTGCCATGTCTGCCAAAAGGTCTACAGCAACAAGGGCACATTCAGAGCCCATTACAAGACTGTCCATCTGCGACTGCTTCACAAGTGTAAAGTCCCTGGCTGTGATACATCCTTCTCCTCTGTGCGAAGCAGAAACCGGCACAGCCAGAACCCGAACCTTCACAGGAACCTAGCCGTTAGCTCAGGTGCCACAATAGACCAGGAGTAGGGTTTTGAGCTCATATGCCAACATGACTGATTTCCTTGGTTCTAATtgttcttttgttgttgttgttgttgttgttgttgtagttgttgtttttgggcACCTAAAGAAGGCTCACCAATTAGCACTTTTTAAATTCCATATCGTAGTCCAATACTTTtgtcagagagaaaaaaaataaagtacaatAAGGAGTTCATTTGTTGTGGCAAATGCAACTTCCTTTTCTAACAAATGGCTTTACACACATCCGTCTGTGTTTACACTTCAACATATAAAGAATAACTGAAACATACACTAAATTAATTTTCAACATTGAGCAATGCAACCTTCCAGTCTTAATCTTCTGTTGTGACGCAGTACtgatttttgttttgcattGGTTTGCCTTACAGCCCAGTTTAGACCTTAAAAAGATGAATTTGTATGAACTGAATTTGTCCATGTGTTGTCCAAAGTGAGAGTTGATCCATGAAACTGTATCATGCGAGTTATTTCTTTCTGGTGTTTTTGTTGTCAGATATCCATATCTTCCCTGTGAAGCTGTGCATAATGTATTGATCAAAAGCAGTAGTGAAGTAACCTCTACATGTGTCATTTCATTCATTTGGACAATAGTTTTCAAAAATAGTCTTTGTTGAAAAGCTATAGTGTTGTAAGCTTGACCAATAAGTTATTGTGTGGTATTATATATGATCTGTCTTTACTGTTTGTTGCATACTGCTAATGTTGACCAAAGATTTTTTTCAGCCCACAGGTGTGTATAGAAACCCCTTCATTATTTGTGAAGGGTTTGCAGTATTAAAAGGGCCCGCCCAGTCTTTTCTCATCTACTTTGTGATTAACAGCAGTATTCAGGGGTGGGCTCTGTTGTAAGATAAAATAGAATTCACCAACACAAtcaaaaaaaacagcttttgaCTGATCTGGGTGAAAAGAATATCTTGATTTTGGTGGagtttttgtaaacaaaatctGCTCATGGGACTAGACTTGATTAAGGTATTGCTCTTGTATTGTTTGTGTGGTTGCTTGCAGTATCCTGACTGACTGGACAAACAGCAGGAATAAATGCTGTGTCTGGAGGCTAGAAGCATGTACTGTGAATAAGTCAAACActgagaaataaaaagaaaaaaaagaaatgcaatttaTAATAATGGCCCCACACGTGAGCACACCCTAAAATAGAACTGGTAAACAATATGTTTATTGAACTGTATATTCTGTGAATAGAGTAATTTGTTATCTGAAAGAAAccaaaaaatatactgtataaaataatGTCACCACTAACATTAcatggttttttttcttttctttttttttgtgaatgaacaAGAACATTGTGTTGTACATTATGATTATTTCATCATGGTCTATTGTTCTGATTTTGCTCTACAATCTGCATATTGTTTTCATTCTGTATTTAAATGGAATGGGCCCAATTTAAGATCCCATTAGTTTGTTGTTtgaatttgttaaaaaaaggagCAAAATCTACATATGTTGACAGGTGTTCATGTTTCCTTTGATTTAATGTTACAATATTCATTCcaattaaataaaaagccaTATGTTTGCAAGCCTCA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24146 BNC; zinc finger protein basonuclin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638846.1 lncRNA upstream 141568 7042183 ~ 7045161 (+) True LOC120556370
TU34746 lncRNA upstream 160968 7023866 ~ 7025761 (+) True G25902
TU34734 lncRNA upstream 181082 7002428 ~ 7005647 (+) False LOC120556365
TU34739 lncRNA upstream 193525 6992995 ~ 6993204 (+) True G25895
TU34737 lncRNA upstream 194798 6987512 ~ 6991931 (+) True G25893
TU34791 lncRNA downstream 86922 7298499 ~ 7298701 (+) True G25942
TU34800 lncRNA downstream 119133 7330710 ~ 7337252 (+) True G25950
XR_005638763.1 lncRNA downstream 418545 7630122 ~ 7632825 (+) True LOC120555850
XR_005638762.1 lncRNA downstream 421254 7632831 ~ 7634497 (+) True LOC120555849
TU34815 lncRNA downstream 454219 7665796 ~ 7673941 (+) True G25959
XM_039795921.1 mRNA upstream 181051 6993956 ~ 7005678 (+) True LOC120556365
XM_039794210.1 mRNA upstream 691008 6493937 ~ 6495721 (+) True LOC120555501
XM_039796247.1 mRNA upstream 791925 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 791927 6382571 ~ 6394802 (+) False rwdd3
XM_039795724.1 mRNA upstream 875589 6295097 ~ 6311140 (+) True mtch2
XM_039795970.1 mRNA downstream 20971 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA downstream 20971 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA downstream 20971 7232548 ~ 7290869 (+) True sh3gl3a
XM_039794993.1 mRNA downstream 106332 7317909 ~ 7330702 (+) True LOC120555848
XM_039794992.1 mRNA downstream 106334 7317911 ~ 7330702 (+) False LOC120555848
TU34538 other upstream 896953 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 896953 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 898652 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 920021 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 1133832 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 1542124 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 1857152 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 2355254 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2635700 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 4820044 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile