RNA id: XM_039795697.1


Basic Information

Item Value
RNA id XM_039795697.1
length 7371
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC120556244
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1312448 ~ 1364726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTCCAGCATAGACGGGCTACTGACAAGAGATTTGCACTTCTTCTGCAGTGCAGCTCGTCATTACAACCAGATGCTCTCCGACGGACCGGAGCCGTTCAGTTTCATGCCGTCCAAGCCGACCGGAGCCTGAGCCGAAGGATGCAGGTTAAAAATCAGATCTGCACCGAGCGGAGCAGCACCGACGACCCGGAGCAGGATGACAACCAGAAGAAGACCTCGTGTTTTTCCAACATAAAGATTTTCCTGGTGTCGGAATGTGCGCTCATGTTGGCACAGGGCACCGTGGGCGCCTATTTGgtAAGTGTTCTGACCACTCTGGAGAGACGCTTCAACCTCCAGAGTGCTGATGTGGGTGTCATTGCCAGCAGCTTCGAAATCGGCAACCTGGCCCTTATCCTGTTTGTCAGCTACTTTGGCGCCAAGGCCCACAGACCCAGACTGATTGGCTGCGGCGGGATTGTCATGGCGTTGGGGGCACTGCTGTCAGCCCTGCCGGAGTTCCTGACTCATCAGTATGAGTACGAGGCCGGGGACTCGTGGCACGCCGAGGACGGCAGGGACGTCTGCTCCAACACCACCAGGTCAGAAAACCGAGACTCTGGGTTTAAATGTGGCAACAGAGCCAACACCAACATGATGTACCTTCTGCTGATCGGAGCCCAGGTTCTGCTCGGCATCGGAGCCACACCGGTCCAGCCTCTGGGAGTGTCCTACATCGATGACCATGTCCACAGGAAGGACTCCTCGCTGTATATAGgtattttattttcaacattAGTGTTCGGTCCGGCCTGTGGCTTCATCTTAGGTTCTGTCTGTACCAAAGTCTACGTGGATGCAGTCTTCATCGACACTAGTAAACTGGACATCACCCCAGATGACCCTCGCTGGATTGGGGCGTGGTGGGCTGGCTTCCTCCTTTGTGGTGCCTTACTCTTCCTGTCGGCTCTCTTCATGTTCGGCTTCCCCCAGGCGCTGGACGAGCAGGACATGGACGGTGGAGGGGAGAGTGAGCAGGCCATGCTGCCTTCTTCCCTGACCATGGAGTACCAGGGCTCTAAACCCAACGGGGCCATTCATGGCTTTGATATAAACAGCGGACTCTCAGTTTGTGAGCATCTGAGAGTAATCCCCAGGGTAACCCGGCACCTTCTCTCTAATCCGGTGTTCAGCTGCATCACGCTCGCAGCCTGCATGGAGATCGCTGTGGTTGCTGGCTTTGCTGCCTTCTTGGGAAAATACCTGGAGCAGCAGTTCAACCTTACCACCTcctcagccaatcagctgcTAGGTATGACAGCCATCCCCTGTGCCTGTCTGGGTATCTTCCTGGGGGGGCTGCTGGTGAAGAAGCTGAACCTGTCAGCTCTGGGCGCTGTCCGCATGGCCATGATGGTCAACCTGGTGTCCACTGCATGCTAcgtctctttcctcttcttggGCTGTGACACTGGACCTGTCGCCGGTGTTACTGTAGCCTATGGCAACGAGACGTTGCTTTCCTGGCAGCGACCTGAGTCAGCGTGCATCAATAACTGTAACTGCTACACAGCATCAGTGAGCCCTGTCTGTGGTTCCAATGGAATCACCTACCTCTCAGCCTGCTTCGCTGGCTGCACCAAACCAAACCTGACCGGTTGCACGTGTATATCCAGCACCAGTGAAGATGCGGTGGCTTTACCAGGGAAGTGTCCCAGTCCAGGCTGTCAGCAGGCCTTCCTCACCTTCCtttgtgttatctgtgtgtgcaGCATGATCGGAGCTATGGCCCAGACACCCTCTGTCATCATCCTTATCAGAACTGTGAGTCCAGAGCTGAAATCTTACGCCCTTGGAGTTCTGTTCCTGCTCCTGAGACTGATAGGCTTCATCCCTCCACCTCTGATCTTCGGCATGGGCATTGACTCCACCTGTCTGTTCTGGAGCTCTGTCTGCGGCGAGAAGGGAGCCTGCATGCTGTACGACAACGTGGCCTACAGGCATCTGTATGTCAGCATAGCCATCGTCCTCAAGTCCTCGGCCTTCGTCCTGTACACAACCACGTGGCAGTGTTTGAGAAAGAACTACAGGAAATACATCAAGAACAGCGAGGGTTACCTCACACCCACTGAACTCTTCGCCTCCAATGTGACTCTGGACAATTTGGGCAAGGAGATCACCCAGAACCCAGCCAACAGGACAAAGTTCATATACAACCTGGAGGACCAAGAGATGTGTGACAACATGGAGTCAGTTTTATAGTGGCTGTCTGCTGGCACTGCAGACTGGAGCTGAGGCTGTAAATGTGCAACTGATCTGATGTTCCTTTGGTGTCTTATCAGTGTAGAAGAATGTTCTCAGTAAGGGTCTTATCTTCTTCTCACATAAAACATCAGACATAATGAAAAAACTGAAGAGATGTTTCTCAAATGTTCTATATCCACATTGCACTTTTTTACTAAAATACAgttgttcttttgttttttgacaTTTCCTTAATTTGACAGCAGAATAGAGATTGACAGCTAACAGGGGCAAAGAAACGACATGGAATGACGCCCCCGAAATTATCTTCTTTAGTTCAACTTCATTAACAGTTCAGTTCAAATTGCCGTCATATTAGATTTAGATTAGTTAGGAGACCAGAGCTCTGTGAGAAGCAGAAATCTGACATGTTGGTTATTCATTAGCTTTATTAgacagtttatgtttttttagaaGGAAGTGCTTCTCAGGTCCAGATGCCAGATAGAAAGGATGACAGTTATCATAGTTGTTTGTAATAACTGATGCATATTTCAGCCCATGGTTGGAGTACTTCTCCAAACAAACAGAACATACAACTACAGACTTATTAACAGACTTGTGTGTTCCCTCAATCAATTCTTTAAAAGTTTTAATAGGAAAAAACAGATCTGCATTGACTACAGAGGCACATCACACAAGAAGCAAAGGCAAACCAACAAATCAGCAACAACAAGAAATAGGAGTACAGGAAGAGGCATAAtcctagtaaacatattacatcaTCATATTACAACACCAGAGAGGTCTCGACTCGAGGCGGCCCTATTTCATGGCTAATCGTTAAAGCCTCTGAGCATCAGAGTCCAAATTTAAAATAAGAATAGACAAAATATGGACCCCAATTAATTTCAAACCCTTTACACAATGACTGCATTTCTCTTTCATCTTAATACAGTTAGAAGTGGAAAATTTATGGAAGATGTAgttttgaaaataaatcatatttgtgtgtttattgttcAATATCTTCTCAAAAGTGAAGATTACAACAATactgttacttttttttgtcaccAGTCATTTTGCTTGAGTAGAGGTCACTGTGCCTCAGAGGGTGGATATTCCATTTTGGAAGCAAACTCTTCAGTTTGAGTTGCACATATTattcagattaaaaaaagaaaaataaggaaCATAGTCTTTTTCAAAAGCTTTCAATGTAATTTGCCCATTCTTGTTCTAGAGGTCAGTTTAGGACATTTGTTGAAGTTAGAGGAGAGTTGAGCCAGTATGTTATAATTATCCCTTTACTGTGTCATAGTGTGGAGTTTTGCTATGAATGCTGGACGAGATTCGGAGACAAATTTTCTGTTTCAGAGtcacagaatgttttttttcttcttttttttttacgtcacacCATTTTGTTGAAATTAAGTCTTTTCTCTTTGGCATTTTTACAATTTAGGTGCAAGTTTCaaaagtaaatataaaaaagtccTTATAGGGGTTTAGCTGATGATCTAAAAAGCAACGGACTATGAGAGAGGATAAAGGACTTTGGTGGCCCACCTATGAATAGTTGGACAATACCTACAGTACATGAGCTGATTCAGTAACTGAACCTGTGACATTTCAGTTACATGATATCTCTCTATCTACTGATTTGACCATTTCACCATTATAATTCTGCCAGGAACACTCATGTCAATGACAAATGGAGAGAGCAGTATAGTTTGACTTGGTGGTGTAATTCTACTCCTAGGGGATGCCCCCTGCAGCAGTAATGCATGGAATACACAGCAACATGATGAATAACAAGCAGGGAATATTGCAAATAAGACTCTCCAGGGTACATGTATGTAGTAGGGCCAAAGCTGGTGGAGGCTGTGGGGGAGGAGGCCTTCAACAATACAATCAGTAACAGCAGCAAAGCTCACATGAGCGTACAGAGTGTGAAGGCATTTAAGTAGAATGCCAAGTCAAGGCACTGAGACATGATGATTGTGGTAGGCTAGCTGTCAGCAGACACAGCATAGCATGACGCACAGTGTCCAGCCAGAATtagttcatttaaaagcatGCTGGTAATGCATgcaatgataaaaaaatatatatttagtatGTCACTAAGCTGCACAGACTCTGTGGTTTGGTGGCCATGGTAATGGTTAAATGCACATTTAACTTCAATGGCCTCTAAATTATATCTAAGACCATGGAAAAGCTTTATAATGCATACTGCATTGTGATGTAGAAAGTTTTTAGCAAACCTCAGCTGACTCATAATCACTCACACTGCAGTGATTGTCttaacacagatttttttttttttcaaatggtaATTTTGTTTTTAGGAATTCTATGGGATTCTGATTTCTGACATATCCAGTTTATATAGAGAATATATTGTTTTTCCTGGCTTACTTTGTAAGTATTTAATATGTTTTGCATCAAAAATATGGACCTTTGTCCAGCCACTCACCATTGCAATAGTCTAGATATCATCCCTTTGATGTTTGGAGGTGGGGGTTAAAGgagtattttaacattttgtaaaaaaaaaaaaaaaaaaaaaagtttttttacgTTCTTGCCGAGAATTAGAcaagaagatcgataccactctcatatttttacggtaaatatgaagctagagcTAGTACCGGCTTAGCTTAAACACTGGAAATAGGGGCAACGTGCTAgcctggcttttttttttatccatacaaaactgtaaaaacaagtTGTTGCCTTTGGTGGGTTGCCTGGCAACTTCACAGCGgtgacaagactccaggaagtcactgcacACCGCCAAGGAATAGTCGTGCACATAACCCCTCCGTCAAAGTGAAACATGTCACTTATACTTCTGGTTTTTGGATAGTTTAAACATATTAGATATAAGGTGTTAAGAGATGCTGCTAGGTAGATTTTATTTCCAGAGCTAGGCTAACGGTTCCCCTCATTTTCtatctttgtgctaagctaagctaaccagctgctggttgTACCctgcagacatgagagtggaatcaatcttcttatctgactctgcaagaaagcaaataagcatatttcctaaaatgttgaactgttcTTTTAAGTTAAAGTTCCCTGATTCAGTCTCATTTTATGCTGCCGTTCATGGTTTATGAGTAAAATTGTTTTGCAAATGGTGGAAATTATCTTGGATCCACACTACTCATATGATGTATTTAGTTTGGCACTTCAATGAACAAAAAGTATAAGATTTAAACTATACATTGATGATGCTTCAGCATCATAAATAATAAAGAGAATATTATATCAAAGGGGGAAAAGAGACAGTTGTTAGAGAATGTTGGAGATCAACAATGAACCTACAAATAACAGAGAGCAAGAGCAGACTAATGTCTCAGTGTAATGGGAACTAAGAGAGGATAAATACAGATTTTTAGCACAGCAGTGAAAGTTCTTAAAGTAGAAGATTTTTTGGGCACTGATTAGGTAGTGTTTGAAACAGTTTCCAAGCTTAAAACTTGACTGTCCCTGATAGGAAGATTGGCTCCTAGCAGAACATCCAGGACAGCCGGACATTATGCTAAAAtgtacaaacaataaaaaaaaaaaagaaaaaaaaaagggaagctTCTAACGGGGAGGAGGGTGTTAACTAACATTACCAGCTAGCAACCATATTCTCCTCAGTAACCCCCAACAGGTGGCACTGTCTTTGATATCTGTAACGTCCAGTGTGTTATAGTGCTGACTCCTCTGTACATATTAGTGCCATACAAGTGCCAAAGTGACACCATAGAAGTGTTCTGTAATGTTCTGCAGAGAACTTTGTCTCACCGCGCTGGAGCTCAGAGCAGATCCTCCAGCTGTATGTAGCCTTTCTGTGATATCCCACTTACTTTCACCATATCATACAAAAAGTGTCCCAAAAAACATATTGCCTATAAAATATTGTATATGGGTCTAGAAAACAGTAGGCCTATTATTTAGGATGTAATAACTGTTAATATGTAGGACTTTTCTACTAGTGAAGGTATTGTCTAATTTAGATTAATCTCTCTTTCCATCAGTGGCGAAGCTGATAACTGTGTGTTGCTTTGGtccaaataaaaacaatactttgCTTGAAATAAGTGGCACCAATGTTAAGCTATAGCCTGACATTGTACAGTAGATAAGGTTGATTGTAGAAAATCAGCCAAACTTCACTGATAGCTGTCCTGCACCTGTGCCTGGATATTAAGCTCTACTTTGAGACTTTCTCTGATGTTGTGCCATATCAACCCGTGCACTGTAACATTCGACACTCACAAAGAAGAAGACGACATATTCTAGGTCTGTCTGATGCACTGGCAAGTGTGACAGCGCTTGCTTGACCTTGTATTCACCTGCGGCGACAGGACTGTTTTGCCTTGTGATGAGAAAATAACTTTGGagcataaatgtttttttacatcCTATTTTTCTCATTATTCTCTTTTGATGACCTTGCCTTGTGGTAACAGCAAGTTGACTTTTGTAGCGGATCTTTAGTGACAGAAGTATGGACATATGAAGAGTTTACTGCCAAAATAAGACATTTCTGGGCAAAGAAAAATGTCCTGAGGTTTATCATTcaagacattttgacatcagTGGACAGTTTTCCTGTAAATAGGCccataatgtgtttttgttgctatTAATTATTTCTTACGATAGTCACTTTTTGTAAACAATGGATGTTATTTTGGGAGCAAACTCTTCGTATGCAGATAGATAATCCTTTGGTTTGAGCCTTTAGGCAGCATGTTGCCTTTGATTATAGTGAAACCATGTGCTAACCATGTGGTTTCAGAGTGATGTGTTTGCTTATGTTGTGGGTGGTATTCAGTGGGTGGATTTCATGACTCTTTGCAGGGAGCCTTGGAAAAGAAAAGGACATTGTAATAAGAAAATATCACCTATATTTTCAAAGCATCACTAAAGATTTTTAGATATGCTCTATTGCTtctttggattttttttctttttttccccctttagaATATATGAATTTATATTTAAAAGCTTTATGTTCTGTATATTTCTTGGAAAAGATTACATGATTGTATGTTTATtgtaaatacattaaatatactatttttgtttttaatatga

Function

GO: NA

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33613 lncRNA upstream 9496 1302719 ~ 1302952 (+) True G24991
TU33606 lncRNA upstream 53632 1258519 ~ 1258816 (+) True G24984
TU33594 lncRNA upstream 57857 1253197 ~ 1254591 (+) True G24972
TU33533 lncRNA upstream 127221 1184725 ~ 1185227 (+) True G24926
TU33526 lncRNA upstream 134267 1175326 ~ 1178181 (+) True G24920
TU33637 lncRNA downstream 21322 1386048 ~ 1386264 (+) True G25011
TU33634 lncRNA downstream 48369 1413095 ~ 1415747 (+) True G25008
TU33792 lncRNA downstream 404556 1769282 ~ 1774440 (+) True G25144
TU33862 lncRNA downstream 818080 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA downstream 818080 2182806 ~ 2183770 (+) False G25203
XM_039794192.1 mRNA upstream 688 1308822 ~ 1311760 (+) True LOC120555491
XM_039794041.1 mRNA upstream 43445 1262950 ~ 1269003 (+) True LOC120555381
XM_039794042.1 mRNA upstream 43445 1262950 ~ 1269003 (+) False LOC120555381
XM_039793914.1 mRNA upstream 60547 1246885 ~ 1251901 (+) True LOC120555232
XM_039793907.1 mRNA upstream 71991 1228417 ~ 1240457 (+) True glo1
XM_039796055.1 mRNA downstream 13284 1378010 ~ 1385075 (+) True LOC120556440
XM_039796056.1 mRNA downstream 13284 1378010 ~ 1385075 (+) False LOC120556440
XM_039795404.1 mRNA downstream 310015 1674741 ~ 1698359 (+) True zgc:165481
XM_039795363.1 mRNA downstream 425227 1789953 ~ 1817994 (+) True slc7a10a
XM_039794589.1 mRNA downstream 674737 2039463 ~ 2182754 (+) True phkb
TU33826 other downstream 474607 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 717232 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2420207 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3205647 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4669483 6034209 ~ 6035193 (+) True G25708

Expression Profile