RNA id: TCONS_00073590


Basic Information

Item Value
RNA id TCONS_00073590
length 2199
RNA type mRNA
GC content 0.56
exon number 10
gene id XLOC_037402
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45227028 ~ 45541367 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTAGGTGAGCGAGGAGTATTGGTGTTCTGGCGGCAAGTACAAATCCAGGTGTGGCTGTGGCTCAGCAAGCGCAGGGCCAGTCGAGACGTTTGACCATCATGGATGTTGATGAGGAAGAGAACATGAGTTCATGCAGCACCGACGTAAAGGAAAACCGCAACCTGGACAACGTCTCTTCTAAGGAGGGAGCTGGCCTGGTGGAGCAGCTCCCGAATGGTAGTGGAGGAGGGGGTCGCAAGCGCCCTCTGGAGGAGGGCAACAATGGCCACTCGCACTCCAAATTCAGACCCAAGAAACGTAAGAAAACCCCAGGGCCGGTTCTGCCCAAAAATGCCCTGATGCAGCTCAATGAGATCAAACCAGGTTTGCAGTACAAGCTGCTCTCGCAAACCGGCCCAGTTCACGCTCCAGTCTTCGTCATGACCGTCGAGGTTAATGGGCAGTTGTTTGAAGGCTCTGGGCCTACAAAGAAAAAGGCCAAATTGAATGCTGCAGAGAAGGCCCTGCGATCCTTTGTGCAGTTCCCAAACGCATCCGAGGCCCACCTGGCCATGGGCCGAACGCTCACAGTCAACACTGATTTCACCTCCGACCAGGCTGACTTCCCTGACATGCTCTTCAACGGGTTTGAGACGCCGGCACCGCCTGAGGAAACGTTTTTTCTGGGTTCCAACGGCAACGGCTCCTTAAACCCGCTGGGAGAGTATCCCGTTCCTCAGGCGGCAGGTACAAACAGCCTCGTGCAGGCGCCGCTCCCGCCGCCCTCCTCCTTCGCCTCCTCGGCCAGCGGCAAAAACCCTGTCATGATCCTCAATGAGCTACGGCCGGGCCTCAAGTATGAGTTTGTGTCAGAGAGCGGGGAGAGCCATGCTAAGAACTTTGTGATGTCGGTGACTGTGGACTCGCAGATGTTTGAGGGATCGGGGAGAAATAAGAAACTCGCGAAAGCCCGAGCAGCCCAGGCAGCTCTGTCATCGCTCTTCAACATGCAACTGGACCAGACCCCGTCCCGACAACCCATCCCGAGGGAGGGCCTACAACTGCACCTGCCACAGGTTCTTGCTGATGCTGTTTCTCGTCTGGTAGTGGACAAATTCAGCGAGCTCACAGACAACTTCACATCTCCACACGCACGCCGGAAAGTTCTAGCTGGGGTCGTTATGACTACAGgCACTGATGTGAAGGACGCTCAGGTCATCTGCGTCTCCACAGGAACCAAGTGTATAAACGGCGAGTATATGAGCGACCGCGGCCTGGCGCTCAACGACTGTCACGCTGAAATCATTGCTCGTCGTTCCCTCATCAGGTATCTCTACATGCAGCTGGAGCACTTCTTAAGCAACAATAAAGAAGAGCACCAAAAGTCCATATTCATGCAGTGTGAGAAGCGCGGCTACAGACTGAAGGACAGCGTTCAGTTTCATCTGTACATCAGCACCTCACCCTGTGGAGACGCTCGAATCTTCTCTCCTCACGAGGCCGGCGTCGAGGATCAGGGAGACAGACACCCGAACCGGAAGGCGAGAGGTCAGCTGAGGACCAAGATCGAGTCTGGCGAGGGAACGATCCCGGTGCGCTCCAGCAACACCATACAGACGTGGGATGGGGTCCTGCAGGGCGAGCGGCTGCTGACCATGTCATGCAGTGACAAAATTGCAAGGTGGAACGTGGTGGGCATCCAGGGATCCCTGATGAGCTACTTCTCCGAGCCCATCTACTTCTCCAGCATCATCCTGGGCAGCCTGTATCACGCAGATCATCTGTCCAGAGCAATGTACCAGCGCATCGCAGACATCGAAGACCTGCCGCAGCAATTCTCCCTCAACCGGCCCCTGCTCAGCGgaATCAGTAACGCTGAGGCCCGTCAGCCAGGAAAGGCACCAAACTTCAGCGTGAACTGGACGGTGGGAGATCAGGCTCTAGAAGTCATTAATGCCACCACAGGCAAAGATGACATGGGCAGAGCATCACGACTCTGCAAACACGCTCTCTACAGCCGCTGGGTCAGACTACACTCAAAgCTCTCACCAACTCTGCGAATCAAAGTGCCCAAGCCCAGCTCGTACCATGAAGCCAAACAAGCAGCAGTGGAGTATCACACGGCGAAGCAAACGCTCATCAAGGCCTTTCACAAAGCCGGCCTGGGAGCCTGGGTGAAAAAACCCATAGAACAGGACCAGTTCTCACTGAACTCTTGA

Function

GO:

id name namespace
GO:0006382 adenosine to inosine editing biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004000 adenosine deaminase activity molecular_function
GO:0008251 tRNA-specific adenosine deaminase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0003726 double-stranded RNA adenosine deaminase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-15 Predicted to enable double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and tRNA-specific adenosine deaminase activity. Predicted to be involved in RNA processing and adenosine to inosine editing. Predicted to be active in cytoplasm and nucleolus. Is expressed in blood island; blood vessel; central nervous system; and immature eye. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human ADARB1 (adenosine deaminase RNA specific B1).

Ensembl:

ensembl_id ENSDART00000193087

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074933 lncRNA upstream 166280 45261384 ~ 45261761 (+) True XLOC_037403
TCONS_00075192 lncRNA upstream 311200 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00075191 lncRNA upstream 383050 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00073584 lncRNA upstream 429466 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00073574 lncRNA upstream 958612 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00074934 lncRNA downstream 7791 45548787 ~ 45553378 (+) False XLOC_037404
TCONS_00073593 lncRNA downstream 10072 45551068 ~ 45553378 (+) True XLOC_037404
TCONS_00075193 lncRNA downstream 324271 45865267 ~ 45879991 (+) False XLOC_037410
TCONS_00074935 lncRNA downstream 324395 45865391 ~ 45868067 (+) False XLOC_037410
TCONS_00075194 lncRNA downstream 337663 45878659 ~ 45884134 (+) True XLOC_037410
TCONS_00073587 mRNA upstream 305051 45112537 ~ 45122990 (+) True XLOC_037401
TCONS_00073583 mRNA upstream 429319 44994214 ~ 44998722 (+) False XLOC_037398
TCONS_00073581 mRNA upstream 588893 44832032 ~ 44839148 (+) True XLOC_037396
TCONS_00073580 mRNA upstream 602696 44722267 ~ 44825345 (+) True XLOC_037395
TCONS_00073579 mRNA upstream 670879 44722236 ~ 44757162 (+) False XLOC_037395
TCONS_00073594 mRNA downstream 64414 45605410 ~ 45623647 (+) False XLOC_037405
TCONS_00073595 mRNA downstream 64421 45605417 ~ 45667487 (+) False XLOC_037405
TCONS_00073597 mRNA downstream 64544 45605540 ~ 45667259 (+) False XLOC_037405
TCONS_00073596 mRNA downstream 64544 45605540 ~ 45667259 (+) True XLOC_037405
TCONS_00073598 mRNA downstream 139806 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073589 other upstream 93936 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 363772 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073585 other upstream 430618 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073582 other upstream 495748 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073566 other upstream 1572431 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073600 other downstream 280473 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073602 other downstream 880031 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073638 other downstream 4244324 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 4548004 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 5259361 50800357 ~ 50800473 (+) True XLOC_037446

Expression Profile

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