RNA id: XM_039795700.1


Basic Information

Item Value
RNA id XM_039795700.1
length 1311
RNA type mRNA
GC content 0.54
exon number 5
gene id znf414
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6315510 ~ 6321567 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCAACTGCCACAACGCGTGCGTGCCGTACTGCATTATGGTTCTTGTAGTCCGTTTTTGATCTTCCTCTAGCCTGTATTGTTGTCGAGCTGTGCTGCACAATGATGTCTTCGGGCAGCACAGTGTTGCAGACAGCTGATTATGGGAGCGGAGGAAACAAGAGGATACCGTGTTCGTTTTACGGCTGTAAGCGGGTGTACTCAGACATGACCGCTCTGGAAAGCCACATCAAGGACCATGACATCCCAGCTCAGTCTCTTCCAGGAAAGGTCTTGCTGTGCTCCACTGTCGGATGCAGTGGTTCCTTCCCCAACATGCAGAAACTGATGGAACATATGAGGCATCATCACAAACCCAACATATTCTTCCTGTGTGAGAACTGTCGCACAAAGTTGCGATCCTACCGAGGCCTCCTGACTCACCTGCACACCTGTTCCAAAGTGTCGCGGGGCAAAACGAAGGCGACCGAACCGACGCCCCCCCTGCCTGCTGCGACCAACCCCAACGCGCCCTTCGCCGCCGCGGACCAGATGCCCCCGCTGCTGGACTCCGTGTCCACACCCCAGCAACTACCCGCTCAAACCCCAAACCCGGACGCTTCCTTCCCCGCTGCTGATCTGAAGCCGGACCCTGCTGCACTCGTTCTCCTCGGCCCCACCTTCCTGTCTAACCCGGAGACCTCCCCTCCCCCGCAGCTCACAGAGGCCGAGCCCCAGCCTCAGATCAAGAACGAGCCCTCTGAACTGCATGTATTCTCCCACCTGGACGGCCCAGCAGCAGCTCCTGACTCACCTGATGCCCAGGGCCAGCACCCGACAAAGACCAGGTCTCCAGAGCCCATCCATCCTGCTCCAGAACCAGCTCCTCGCTCTCCCCCTGGGGCCTCCGTTGTCTGGAAGAAGGGTCAAGGTCTGTCCTGCAGCAGACGCATCCTCTGGGAGCACACCAGGGGGCGCTACACGTGTGTGCAGTGTGGCCACATGGTGACCAACCGCAAGGAAATGACTCACCACATCAGCACCAAACACAGCGGTAACAAACCTGCAGGAGACACCGGGAGCTCTGCCTACAACACGTAGTGTGGAGCAGGAGGACCCGTTTCCTGAGCGATGCTCTGTGGAAGCAAATGTTGTCTTTATGTTGTCCTTGAGGACCGATGGGTTCCATTTAGGGCTGCACTATGTGAGGAATATATCTAATTGCGATCTAATTGTATTTCttactgatattgcgatatgattcacgatattggaggaatgctcatttttctcattttcattgaaaaatataaaaaaatttaaaaaatgtaat

Function

GO: NA

KEGG:

id description
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34592 lncRNA downstream 1303 6313983 ~ 6314207 (-) True G25769
TU34580 lncRNA downstream 4376 6253323 ~ 6311134 (-) True G25759
XR_005638729.1 lncRNA downstream 104432 6209894 ~ 6211078 (-) True LOC120555540
XR_005638728.1 lncRNA downstream 189520 6123047 ~ 6125990 (-) False LOC120555539
XR_005638727.1 lncRNA downstream 189520 6123047 ~ 6125990 (-) True LOC120555539
TU34610 lncRNA upstream 1710 6323277 ~ 6326642 (-) False ankdd1a
TU34609 lncRNA upstream 1849 6323416 ~ 6326642 (-) False ankdd1a
TU34625 lncRNA upstream 84821 6406388 ~ 6406597 (-) True G25795
TU34654 lncRNA upstream 187721 6509288 ~ 6524335 (-) False pop4
TU34661 lncRNA upstream 208600 6530167 ~ 6531894 (-) True G25828
XM_039794286.1 mRNA downstream 33986 6278137 ~ 6281524 (-) True LOC120555542
XM_039794282.1 mRNA downstream 73860 6234180 ~ 6241650 (-) True LOC120555535
XM_039794283.1 mRNA downstream 121974 6183632 ~ 6193536 (-) True LOC120555536
XM_039794281.1 mRNA downstream 147981 6156222 ~ 6167529 (-) True LOC120555534
XM_039794280.1 mRNA downstream 162097 6145429 ~ 6153413 (-) True LOC120555533
XM_039795701.1 mRNA upstream 1714 6323281 ~ 6346561 (-) True ankdd1a
XM_039795605.1 mRNA upstream 25622 6347189 ~ 6379078 (-) True plekho2
XM_039795895.1 mRNA upstream 133064 6454631 ~ 6482010 (-) True pcsk6
XM_039794172.1 mRNA upstream 184796 6506363 ~ 6508694 (-) True LOC120555473
XM_039795883.1 mRNA upstream 187692 6509259 ~ 6524355 (-) True pop4
XR_005638726.1 other downstream 147981 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 4038419 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 4039501 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 4482116 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638786.1 other downstream 4673162 1588886 ~ 1642348 (-) False LOC120556047
TU34701 other upstream 320879 6642446 ~ 6644606 (-) False dok4
XR_005638761.1 other upstream 1011217 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 1822640 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 2531220 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 2973501 9295068 ~ 9296746 (-) True G26298

Expression Profile