RNA id: XM_039795707.1


Basic Information

Item Value
RNA id XM_039795707.1
length 4808
RNA type mRNA
GC content 0.44
exon number 20
gene id rufy2
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30457240 ~ 30487984 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGGTGATGGTTATGGTTTCTGTTGGTGATGTCTCCAGAGCTTGTTCCGGCTTACTGCTTCAGACCTGTAGAAGCTCATTTTGATTTAACAGCTTTGCAGCACCTCTAGATTTGATTGAAtaagatacatagatagatagatagatagatagatagatagatagatagatagatagagtgtTTTGAAAGAATATGTAAAAGAACATATATCTGTTCATCATCTCTGTGGCAGTAATGGTACCATCTGAAGTTTCCACCATGGGACATCTAGGAGCCACTCACTGCTGCCTGTAGCTGCCACAACTGGCCTGGGATTGACACCCTGAAGCTTGGAATGTACATTCTGCCAGGAAGTCGAGGAATCAAGCCCATCTTGACCAGTTTCCACAGAGTCATTGCCTCACGCTCCATATACTGGACCAGAGCATAGACTTATCCTTTTTGGGACTGGACTACTGAGTGCTGATAAGCTGCAGAGATAAGGATCAACTCTCTGCTTTCTACTGCCTGAGGCTGTCTTGCACAGCTCAGCAGAAGCCCAGCACATCCTGAGACTGTGACCAAACaggaaaacaccatatttgagGGTCATCTGGTTCCAGGGAATCAGAAAAATCCAAATAAACTTGAAAGTGCTGCAGCAGCTTAACAGGAAACAGACCAGAGGGAGCCACTTCAGGACTCAGGGATCTGCTTGATTTACTATCCTCTTTGCAACAATACAGTGGGCAAAGGAGAGTACCACTCACCATGTACTCCCCTCAGAGTCTCCACCGCTGGGGCATCACTCATAGTGAGAGTATGGAGCGGTTAGCCTACAGCCAGGCTGTGCGAGACCCCATGGCCATGGAGCGAGCCAACCTGCTGAACATGGCCAAGCTGAGTATTAAAGGACTGATCGAGTCGGCTCTGAGCTTTGGACGAACTCTGGACTCTGACTACCCACCCCTCCAGCAGTTCTTTGTTGTCATGGAGCACTGCCTTAAACATGGCCTCAGAGTGAAGAAGTCCTTTCTGGGCTTTAACAAGTCACTGTGGGGCCCTCTGGAGCTGGTGGAGAAACTGTGTCCTGAAGCAGCAGAGATCTCCGCCTCTGTACGAGACCTGCCTGGACTTAAGACTCCATTAGGCAGGGCCAGAGCTTGGTTGCGTCTGGCTCTCATGCAGAAACGGCTGGCCGACTACCTACGACTCCTCATCACGAGAAAAGACCtgctcagTGATTTCTATGAGAATTCAGCCCTGatgctggaggaggagggagccGTGATAGTGGGCCTGCTGGTGGGCCTGAACGTCATCGATGCTAACCTGTGTGTCAAAGGCGAGGACCTGGACTCTCAGGTTGGGGTGATCGACTTCTCCATGTACTTGAAGAATGACATTGATGATTACAGGAGTGAAGAGAGGAATAGCCAGATAGCATCCATCTTGGATCAGAAGAACTACGTAGAGGAACTGAACCGACAACTCAACTCCACAGTTCATGGTCTTCAGGGCAGAGTGGACTCTCTAGAGAAGTCCAACTCTAAACTCATAGAGGAGttagCCATAGCCAAGAACAACATCATCAAACTGCAGGaagaaaaccagcagctgaggAGTGAAAACAGCCTTATTCTGATGAAGACACAACAACATTTAGAGgtaACCCAAGGTGATGCGTCAGTGGAGAGAGATACATACAAACAGTCACGTCAGGGTTTGGATGAGATGTACAGCGAGGCTCAAAGGCAACTGAAGGAGGAGTGTCAGCTCAGACAGGATGTGGAAACTGAGCTGTTAGTCCAGGTGTCGATGAAACAGGAAATGGAGATGGCCATGAAACTTCTGGAAAAAGATATTCATGAAAAACAGGACACACTGATCGGACTGAGACATCAACTGGATGAAGTCAAAGTTATCAATGTAGAGATGTACCAGAAGATGCAGTCGTCTGATGaggagatgaagaagaagaatgacGTGATCACTCGTCTCGAGGAGAAGACCAATCAGATCACTGCCACCATGAAGCAGCTGGAGCAAAGATTACAGGAGGCAGAGAGGCACCGCACCTCAGCCGAGGAGGGAACCAGACGCTTCAAGTTGGACTTTGCCAACAAGGCCGACAGCCTGCAGCGGCAGATCGAACACCGAGAAAAGCAACTCCAGCAGCTGGAGACGGACCTGAAGATAGAGAGGGAGTGGAGGCAGACGTTACAAAATgacctagagagagagagggatacgGTGGCTCAGCTCAGCACAGAGGCGCTGCAGATCAACGGACTAAAGAAgGAGTTCCATCGTCTCCAGGATGAAAACATTCAGCTGAAGACCGTCTGTGAGGACCAAGAACAAGCTCTCGAGGAACTAGGCTCCAAACTGAGCGAATCCAAACTGAAGATTGAGGACATCAAAGAAGCCAACAAAGCTCTTCAGGGGGGTCAAGTTTGGTTGAAGGACAAAGAAGCCAGCCACTGCAAGCTGTGTGAGAAAGAGTTCTCCATCTCAAGACGAAAGCACCATTGTAGGAACTGTGGGGAGATTTTCTGTAACAGCTGCTCTGACAATGAGCTCCCTCTGCCCGCGTCACCAAAACCAGTCCGAGTCTGTGACACCTGCCACGCCCTCCTCCTCCAGCGATGCTCCTCCAATCCAACGTGAAGGAGCCCCACACTGCTGCCGTGACTGCTTCAAACAATCAGAGATCCGATCAGCACCCTCCGGTCCTCTGTAAGAAGCATCTCCCAACTTCTCTAAACACAGTTTGCTGCTAGAAATGGACTGTGTGCATAAACACAACAAGAACATTTAATTTGTCTTCATTTACAGGTTGAAAAGGTCCCTCATAGATAAAATGCGGGGCTTCTGCATCATTGTAACCCGTCTTTGTTTGACGTCACTACTTTCTTTGCAGATGTTTTGCggtatacataaaaaaacatctcatgTAATCAGGAGGCAATCGCCCACTACAACATAGGCTGACATGTCTTACATCGAAATCGAAGGAGTTAGAATCTTTGGTCTGCTTTAATATCATAAACAATCATTATCTATCCTAAATATACATCAGTTATACAGATTAAATCATTTACAGTACATTGACAGAGAGTCATGCAAAACAGAACTGTCTGAGGACAGAGCTCTGCTATGAAAGGAGGAACCACTTTACTATGAACTGAAAGTGAAACGGCACTGACTGTGACGAGCACTGCTGCAGCTAAATGCAGATCTTCAACCAAACCTTCAAGTCTTATGTAGTAATGCATCATTATAATGTATGTATCAAGCATCAAACTGTATACATTAAGTGTATAGCCAAACACGAGATTATATAATTTATTCACACAGTATCGTGGTCTTGTAAGTGAGTCAGACTGCAAAGCACCTCCTTTTGAGGTGGAGTGACATTAACACAAACATAAAGGCACTATTTACACAGGCACAAAAGACTAGTCCAACTTTACTAGATACTAAACTGAAATATAAACTGGATACATTTCTGTTTAGTTTGCTGTGAGGAGATCAGAACCGTTTTAATTGCAGTCGTTTCACAGGAGCAACATGGGAATATATTTTGTGACAAAGACCTTTCTACAAACTAATTCCAGGAACGCTCACAGCTCCAAGCAGGTTTTGCTCTGCTGACACTATGACCAGACTAGTTCCTCTTCGGCCTGTGGCTTTCAAAGGAACcgaaagttgttgttgttttttaacaatgttGGCCCTGTTTGTACCTGTATAAATGCAGTGAATATTACTTACTTGTGCTTCTCACATTGCCAAAATGAGCGCTAGATTTCTAGAGAGTTTCTGTAGAGAAAATctaaaatatttcaaagcaaCACTAGCCTATACTAGCCAAGCAAAAGTCTAGATTAAAGACATTTCACTTTGTTTGAGACACTAATGCAGTGGATGCTGCTGTAAGGACCAAGAAGAGCAACCGATGACGTCGTGATCTCTGGCGACAGATTGAAATCAGACCAACTGGCTCTTTAGCTGATGAACCACTGACAGCTAGCTTACAGCAGGACCACTTCACTGACTACTTAGTGAACAGACTTAGTGTTACACACTTCTGACACCATAGCCACAAAGTATGTTTGAACAGTTGCCAATCCTATATTACGTGTAATATAGACGAATTTCAGAGTATTTATATTTGATTTGGCGCAttcgtttttattttcaaaagtcCAGGGAACTAGTTTGAGCTTTTCCCTGTTCACTTGAAGTTAGTTGTAATCTGTGCAGATGGAGACGTTATAGAAGGACCACACTTTACTGCTGCTCCATTCCTGAGAGGGAAAGTTTGAAACTCtaaaccattttttttcctttttttttgtatttgtgttgttaaACTAATGCTGATGATTGTAAAGTAGTCTTTAGTCACGGGTTCCACTGCACACTCTGGTTTTGTACCTAAACACGTTTACAGCCTGTGACTTTTTAAGAACTGGAAGTATTCATTCCCATGAATAGATAAAACAGGCCTGGGTTCATTTCAATAAGGGTTTTTATggtttcaaatataaaaaaactcaTTAATCATCATTAAGTACTATAGGCAAATGTTTCTGAATTGCACCCAGGCCTAAACCCTTTTTGTACAGTGTCACTCTTATAAATCTCCCAGCTTTCAATGGGACTTGTACAGTGTTAATACCACTGTATGTACATAGTGTTGATAAAAATCACTGTGGCCCTTTAGCTTACTAAATCCTGCCAGTTTAATATTAACTTTATTGCCAACAGTGTGTTGCCTTGACTGTGTAGCAGTTTCTGATTAAATCAAAATACAATCGTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41220 lncRNA downstream 32917 30421690 ~ 30424323 (-) True G31027
TU41221 lncRNA downstream 32917 30422942 ~ 30424323 (-) False G31027
TU41216 lncRNA downstream 47184 30408105 ~ 30410056 (-) True G31024
TU41201 lncRNA downstream 113338 30343416 ~ 30343902 (-) True G31013
TU41150 lncRNA downstream 168807 30279057 ~ 30288433 (-) True G30969
TU41361 lncRNA upstream 81903 30569887 ~ 30585456 (-) False G31110
TU41366 lncRNA upstream 90302 30578286 ~ 30579304 (-) True G31115
TU41360 lncRNA upstream 95352 30583336 ~ 30585456 (-) True G31110
TU41405 lncRNA upstream 211419 30699403 ~ 30726354 (-) True G31146
TU41409 lncRNA upstream 281599 30769583 ~ 30769809 (-) True G31150
XM_039795713.1 mRNA downstream 10580 30442247 ~ 30446660 (-) True LOC120556252
XM_039794962.1 mRNA downstream 96008 30353428 ~ 30361232 (-) True tacr2
XM_039795576.1 mRNA downstream 278626 30166818 ~ 30178614 (-) True ddx21
XM_039796142.1 mRNA downstream 491493 29617320 ~ 29965747 (-) True LOC120556497
XM_039794374.1 mRNA downstream 904767 29541607 ~ 29552473 (-) True rnaset2
XM_039795715.1 mRNA upstream 1339 30489323 ~ 30491474 (-) True LOC120556254
XM_039795670.1 mRNA upstream 27271 30515255 ~ 30532142 (-) True fam120b
XM_039796243.1 mRNA upstream 78806 30566790 ~ 30568574 (-) True mis12
XM_039794793.1 mRNA upstream 118663 30606647 ~ 30610958 (-) True rhoua
XM_039794792.1 mRNA upstream 130873 30618857 ~ 30626072 (-) False LOC120555751
XR_005638738.1 other downstream 996004 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 1188076 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 1610275 28770001 ~ 28846965 (-) False mafa
TU41279 other upstream 42767 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 2403515 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 2854263 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 2950479 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 3318952 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile