RNA id: XM_039795717.1


Basic Information

Item Value
RNA id XM_039795717.1
length 3193
RNA type mRNA
GC content 0.50
exon number 12
gene id cpeb1b
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15490399 ~ 15504450 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCGCACGTTTACTAAATTTAGACTAATTAGCTGGCGAGCAGACTTCATAAATATGACATTTTGTTGCTGCCAACGATTATTATTGTGACATTTCTTATATGCTATCAGTCCACAACATGGCGTTTTCTCTGAGAAATGATCCCCGCAGGCCGGACAGCCCGGACTCCGAGTCGCCGGCCCTGTCCACCTGCAGCAACGCGGACATCTTCCGAAGGATGAACACCATGCTAGGCAACGCTTTGGATTTCAGCGGTGTGTGCACCACACCTAACACCAAGGGAAAGCCAGACCTGCTGTGTGAGTCGGAGCTGGCTGCAGTGGGCAGCAGGAGGATGCTCTTCCCCAACTGTGGTGGCATACCCAGCTCCCAGGAGATGCCTTCATCCAGGGGCCCACCGGGTGTCACAGACCTGGGCCTGGGCCTCCAGTCTCTGCGGCTGTCTGGCTGGGACAGACCTTGGAGCAGCCAGGAGACAGACAACCACACCTCTCCCTCCAAGGTTCAGACCAGCTCACCCTCCATGCTTGGTATACTGAACAGCCCCTTCAGTAGCATCCTTGGGAAGCCCCCAGGCTACATGCCCCCAGAGTCCATGAGCATGACTGCTGACTTCCTGGAGAAGTTCCCCAGCATGGCTCGCATCTCAAACCGTCTGGACTCAAGTTCCTTTTTGGATTCTCGCTCCAGCAGTCCTGAGGACTCGGAGACCAGTGGGTTCAGCTCTGGCTCAGACCACCTCTGTGACATGCTGTCAACTTTGCGAATTTCCCCTCCCCTGCCTTATCTGGCGTCAAACATGCAGAAGGATCTGCTGCGACTGGGCTCCCGTCTGGACCCCCAGGACTCCAGCTCTCCTCTGACTCCACCATCCAGTGCCAGCCCTGCCTCAGCCATTTCCCGCCGCTGGCGTACTGGCTCTCCCTGGCCTGGTGCAGAGCTGCTCGACCAGTCGGATGATACGTTCAGTATTGAGAGGGAGGCCCGCCTGCACAGACAGGCTGCAGCTGTAAATGAGGCCACATTCACCTGGAGTGGTCAGCTGCCTCCCAGAAATAACAAGGATCCTCTGTACTCCTGCAAGGTCTTTCTTGGTGGCGTGCCCTGGGACATCACCGAAGctggCCTGATCAACACCTTCAGTGGCTACGGCCCTCTGACTGTGGAGTGGCCTGGTAAGGATGGAAAGCACCCTCGCTGTCCTCCCAAAGGTAATGTTGCTAAAGGCTATGTTTATCTGGTGTTCGAGAACGAGAAGTCTGTGCGGGCATTGCTCCATGCCTGCTCCCAAGACCCGTTTCACCCAGAGGACAACCGAGAGTACTACTTTAAGATGTCCAGTCGCAGAATGCGATGCAAGGATGTGCAGGTGATCCCCTGGGTGATCTCCGACAGTAACTACGTGCGCTGCCCCGCCCAGCGTCTGGACCCCAGTAAGACGGTGTTTGTTGGCGCGCTGCATGGCATGCTGAACGCTGAGGCCCTGGCCAGCATCATGAACGACCTTTTCGGAGGAGTCATGTACGCTGGCATCGACACGGACAAGCACAAGTACCCCATTGGCTCTGGACGTGTCACTTTCAACAATCAGCGCAGTTACCTGAAGGCTGTGTGTGCAGCGTTTGTGGAGATCAAAACTCCAAAGTTTACAAAGAAGGTGCAGATTGACCCGTACCTGGAAGACTCCATGTGTCAAATTTGCCTTCGCCAACCTGGGCCTTTTTTCTGCAGAGACCAGGCCTGCTTTAAGTACTACTGCCGCTCTTGCTGGCACTGGCAGCACTCCATGGACATCTTGAGCAACCACCGGCCCCTCATGCGCAACCAGAAGAACAGAGACTCCAGCTAAAGCAGATGGATCCAAACACTCTGAAGGGCCAGAGGAAGAGCCCCTCTCAAAGGGGCGAGGCTGCACGCCAAGGAGAGCACGTGTGCCAGATGTCCCTCGGTACGAGGGCACCATGGCACTCCACCAGGCACTGGGGATATCACTGTAGAAAATGTTCACTTTTGCACTTGCTACATTTTTGCTGTTCACAGTGGCACTATGCACAGTGACCTTGTTGGGAAAGACAAGGGGCCCTTCACACTTATGCATTTTCACAGACTtgctgacagacagaaagatgTGAGTCAGCCTAAGGTTAAGAAGTGGATGAAAAGgccaatttttttctttttttttctttttgtttacttGTGTTGCATAGTGAAGAGCAATCACGCAAGTCTCATTGCCGTTCATTGGCAAATGCCATACAGTGcctttaaatttttattttcctccccctgctccctccctcccctacCCCCAGTTGGCATCTGTTTTTCCTGTGCAAGCCAACTGGTGTTTCTTACTTTTGGGAGTTGAATGTTGGGCTTCATTTAACCAGTCgcatttcagacatttttacGCAGTTTTTTACTAATTTGTACACAAACGGTTTTAAGTCATAACATGAAAATTTTGAACAGAACTACCAGGCGGCTGTTTATGGGAAAACCCctccccttttttattttttcatttttctcatactttttttttttttttttttcgtggctttttctttttttaatttgcccTTCCAAGTTTCAGCTAAATGGGCACAAAATGTTGGAAGTACTACTTTAACTTGCTTTGTTGGTCCAGTTGTATTAAATGTGTAACATTTGTACACTTCAACTGGGCAATCCATCGTTTCTCAAGCACCTGATGGATCCTGTTGAGAGAGTGAATGAACATTTGTTGTACTAAGTTTGATTTTTGCACTTTTTAATTTGCACGTGTGGAGAGGTGGCAGtggtttttaatcacttttgtaCATCAGCACGGGGACACGCCTATGTTGGAACAGCTGCTTGTTTCCTGTTGAATGTAAGAACTTCCACTTAGCTGACGATAAACTTAATCTATCCAGAGCTTGAGTAGACCCCAGTAAATGATTCCATGCTTTCTTAATCCCATTTTGCCTTCTTGTTCCAGTTGGACATAAACTCATAATAAGCTGTGTGCCAAAGACCAAGTgtcttttctttatccattacGTTTGTCATGCTGAGCTTGTTGTCCCTTAGCCCAGCTGCTTTTTAGAGTTTTGAAAGTCTACCTCATTGTGGTCTGCCAAGTTTGCTGCTACTTGCAGTTGTGGAATATGTTCAGATTGGGCACAATAAAGGTGTTTAAGCATTA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36562 lncRNA upstream 424894 15062219 ~ 15065509 (+) True G27459
TU36556 lncRNA upstream 436784 15047877 ~ 15053619 (+) False LOC120556271
TU36558 lncRNA upstream 436784 15047877 ~ 15053619 (+) True LOC120556271
TU36557 lncRNA upstream 436784 15050283 ~ 15053619 (+) False LOC120556271
TU36548 lncRNA upstream 472898 15016584 ~ 15017505 (+) True G27449
TU36704 lncRNA downstream 19524 15523974 ~ 15531915 (+) False G27565
TU36705 lncRNA downstream 19524 15523974 ~ 15530314 (+) True G27565
TU36708 lncRNA downstream 29553 15534003 ~ 15535415 (+) True G27566
TU36709 lncRNA downstream 41041 15545491 ~ 15545779 (+) True G27567
TU36710 lncRNA downstream 41994 15546444 ~ 15546655 (+) True G27568
XM_039795275.1 mRNA upstream 3952 15475147 ~ 15486451 (+) True LOC120556001
XM_039795276.1 mRNA upstream 3952 15475150 ~ 15486451 (+) False LOC120556001
XM_039795277.1 mRNA upstream 3952 15475157 ~ 15486451 (+) False LOC120556001
XM_039795278.1 mRNA upstream 3952 15475161 ~ 15486451 (+) False LOC120556001
XM_039796045.1 mRNA upstream 43911 15441455 ~ 15446492 (+) True LOC120556433
XM_039796267.1 mRNA downstream 513818 16018268 ~ 16021643 (+) False senp8
XM_039796266.1 mRNA downstream 513958 16018408 ~ 16021643 (+) True senp8
XM_039796262.1 mRNA downstream 513962 16018412 ~ 16021643 (+) False senp8
XM_039796265.1 mRNA downstream 514300 16018750 ~ 16021643 (+) False senp8
XM_039796264.1 mRNA downstream 514320 16018770 ~ 16021643 (+) False senp8
TU36678 other upstream 3982 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 44011 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 2252584 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 2380064 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 3458675 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 2220098 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3057445 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 3982796 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 3993288 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 3993643 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile