RNA id: TCONS_00073592


Basic Information

Item Value
RNA id TCONS_00073592
length 117
RNA type rRNA
GC content 0.50
exon number 1
gene id XLOC_037402
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45227028 ~ 45541367 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AggtacagccatatcaccctgcagtccAGGACTGGTTACttgctgaagctaagcagggctgagcctggtcaatacctggatgggagaccacatagaaaaactaggttgctgtttgaa

Function

GO:

id name namespace
GO:0006382 adenosine to inosine editing biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004000 adenosine deaminase activity molecular_function
GO:0008251 tRNA-specific adenosine deaminase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0003726 double-stranded RNA adenosine deaminase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186323

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074933 lncRNA upstream 278716 45261384 ~ 45261761 (+) True XLOC_037403
TCONS_00075192 lncRNA upstream 423636 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00075191 lncRNA upstream 495486 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00073584 lncRNA upstream 541902 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00073574 lncRNA upstream 1071048 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00074934 lncRNA downstream 8194 45548787 ~ 45553378 (+) False XLOC_037404
TCONS_00073593 lncRNA downstream 10475 45551068 ~ 45553378 (+) True XLOC_037404
TCONS_00075193 lncRNA downstream 324674 45865267 ~ 45879991 (+) False XLOC_037410
TCONS_00074935 lncRNA downstream 324798 45865391 ~ 45868067 (+) False XLOC_037410
TCONS_00075194 lncRNA downstream 338066 45878659 ~ 45884134 (+) True XLOC_037410
TCONS_00073587 mRNA upstream 417487 45112537 ~ 45122990 (+) True XLOC_037401
TCONS_00073583 mRNA upstream 541755 44994214 ~ 44998722 (+) False XLOC_037398
TCONS_00073581 mRNA upstream 701329 44832032 ~ 44839148 (+) True XLOC_037396
TCONS_00073580 mRNA upstream 715132 44722267 ~ 44825345 (+) True XLOC_037395
TCONS_00073579 mRNA upstream 783315 44722236 ~ 44757162 (+) False XLOC_037395
TCONS_00073594 mRNA downstream 64817 45605410 ~ 45623647 (+) False XLOC_037405
TCONS_00073595 mRNA downstream 64824 45605417 ~ 45667487 (+) False XLOC_037405
TCONS_00073597 mRNA downstream 64947 45605540 ~ 45667259 (+) False XLOC_037405
TCONS_00073596 mRNA downstream 64947 45605540 ~ 45667259 (+) True XLOC_037405
TCONS_00073598 mRNA downstream 140209 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073589 other upstream 206372 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 476208 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073585 other upstream 543054 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073582 other upstream 608184 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073566 other upstream 1684867 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073600 other downstream 280876 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073602 other downstream 880434 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073638 other downstream 4244727 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 4548407 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 5259764 50800357 ~ 50800473 (+) True XLOC_037446