RNA id: XM_039795724.1


Basic Information

Item Value
RNA id XM_039795724.1
length 1656
RNA type mRNA
GC content 0.47
exon number 13
gene id mtch2
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6295097 ~ 6311140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACGCAAGACCAGACCAACTTCCTATCTCCCCTGTCTCTCCAAAAATGGCGGACGCGTGTGGCCAAATATTGCTGGGATCAGGGCTCACCGTCCTCTCCCACCCTCTGATGTACATTAAAGTCCTGATCCAGGTAGGACATGAGCCGCTCCCTCCCACCCTGGGCAGGAACCTGTTTGGCAGACAAGTTCATCAGCTGCCTGGACTCTTTGCTTATGCAAAACACATCATCCAGATCGATGGGAAAGCGGGTCTCTTCAATGGGCTTGTTCCCAGGCTCTGTGCCGGCTCCATCGGCACCATAGTGCACAGCAAAGTTCTGCAGAAATGTCAGGAACAAGGCACGCCTCAGGTACTGGGAGGTCAGCAGAAGGCTGTGGAGGGCTCCCTACAGCACGTGGTTAACGAGACGACCAAAGAGATGATCGCTCGCTCCTGTGCCACCGTCGTCACGCATCCCTTTCATGTGATTACTTTGCGATGTATGGTCCAGTTTATTGGGAGAGAAACAAAATACAGCGGGGTGTTTGACTCCATCGTCACAGTCTACAGAGAAGAGGGCATCCTGGGCTTCTTTGCTGGTTTGATTCCTCGTCTGCTCGGTGACGTCCTGTCTCTGTGGATTTGTAACTTGCTGGCTCACCTCATCAACACATACGCCATCGATGACTCGATGAGTCACACAGGAGAAATCAAGAACTGCTCTCAGGCTGTGACCGGGTTCTTTGCCAGTATGCTGACGTATCCTTTTGTTTTGGTGTCAAACCTCATGGCTGTCAATAACTGCGGGCTTGCTGGAGGCCTGCCCCCCTATGCATCAGTATACCCCACCTGGGTGGACTGCTGGAGGCATCTAAGCAAAGAGAGCAACATGAGCAGAGgcaacagtttatttttccggAAGCTTCCGGCAGGCAAGATGTACGCAATTGACCAGAAgagatttttttaaagcctcAAGAGAACTGAGCTGAACATAGTTGTGATAatgaaaccaaacaaaaaaatatcaacCTTGCCTGACCTGGGGATGGACAGTCGGCActtaatcttttttttgtatgcACTTGTTTACTACGagggtttttcttcttcttcttgataACCTGccatgtgaaataaaaaaaaaccccatTAATTTCCAGTTAATTTCtaagttttgttttattaacaGAAATGTACAGATTGAAACTGCAGGGCTGTAGAATGAGATGGAGcattacatattttaaaaaaaacaacaaaaaacatgtacAAAATGTGATTGGATTAGctcccatgtttttttttttttattttttaaatatagatTATCGACAATGACTCCCCTTCATCCACGTGATGGGATTTGTTTGTTGAAAACAGCACTTAAGTCTGCATGTGGTTATGTCTATTAATTCACGTTAGTGATCAAGTGGGACCTCTTGTCATGTGGTATTGTGTGTCAAGTGTTAATTATCATGGCGCTCGCTGCTTGGCGGTAATGCTAGTGGAAAGGAGGGAAAGGCCCCGGCGGATGTTCAGGTGCATGTATGGGATGTACAGAGGCATGGAGGCTAGCCTGAGCTGACCAGTCTGTCTTGGCACTCTGAGCAGCCGAGTAATTGTATCAGCTCATTCTGACCGACCCGAATAAAAACAGCTTTTTTGACCTTG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17885 MTCH; mitochondrial carrier

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34500 lncRNA upstream 14310 6278701 ~ 6280787 (+) True G25713
TU34494 lncRNA upstream 257128 6036859 ~ 6037969 (+) True G25710
TU34492 lncRNA upstream 259308 6035456 ~ 6035789 (+) True G25709
TU34435 lncRNA upstream 382644 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 402072 5892721 ~ 5893025 (+) True G25673
TU34614 lncRNA downstream 79459 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 116918 6428058 ~ 6428260 (+) True G25797
TU34657 lncRNA downstream 218378 6529518 ~ 6532184 (+) True G25824
TU34660 lncRNA downstream 279055 6590195 ~ 6590618 (+) True G25827
TU34687 lncRNA downstream 330310 6641450 ~ 6641983 (+) True G25850
XM_039794284.1 mRNA upstream 28389 6262410 ~ 6266708 (+) False LOC120555541
XM_039794097.1 mRNA upstream 262943 6026435 ~ 6032154 (+) True fadd
XM_039795083.1 mRNA upstream 273677 5918755 ~ 6021420 (+) False ano1a
XM_039796247.1 mRNA downstream 71430 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 71431 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 182797 6493937 ~ 6495721 (+) True LOC120555501
XM_039795921.1 mRNA downstream 682816 6993956 ~ 7005678 (+) True LOC120556365
XM_039795696.1 mRNA downstream 875589 7186729 ~ 7211577 (+) True bnc1
TU34538 other upstream 5321 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 5321 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 7020 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 28389 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 242200 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 2442561 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2757589 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 3255691 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 3536137 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 5720481 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile