RNA id: XM_039795728.1


Basic Information

Item Value
RNA id XM_039795728.1
length 1647
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC120556259
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17549990 ~ 17556201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTGCATCAGCTGATAGCGGCAGAGCAGCACCACAGCCGTGCTACTCTTTTAGTGAAAAGTTAGGATACACTACTGAGTTGTACCTGTTTTATCATCGACAAAAAGTGGAGGAGACTAAACCTATTATTGATGGTTTTTGTTCTTTGACCAGAAACCCTCCTTTTGGAGAAAGTGATTTATTCGCAGCAGACTTCTGACTTCTGCTCCTCGGCGTCACAGCTTTTCTCTCCTCGAGGATTTATACCACGCAGGCACAGTATCAAGGTGTTTCACGGGACTACTCCAATCACATTTCTCTCTGCGGGCTTTGGGGATTGCACAGAGGGCATTAAGGATCCGGATTTGTCCTCACAGCCAGGATGATGATCTGTTGCCTCCAAACTCTGCTGTTGTTGGGGGCTCAGCTGGTTTTGTCAATCCCAAACAGCTTCTTCTACCATGACTTCCTCAATGGAAATGGCAACAAAGAAATTCATTTCAGTGGCGTAAAGCTCCATGTGGACTCTGCTCAGCCATCAGTGTTTGCAGTCACAGGGGGTAATGCCACCATGCCATGCAGTTTTTGGTATGAGCCTGAGTTGAGCTCGCCAAGGGACATACGGGTCAAGTGGTCCTGGCTCCCGACTGCTGCTGGGGGACAGGAGACAGACGTGCTGGTGGCTATCGGCTCCCGCAGTCGAACTTTTGGGGACTTCAGGGGTCGTGTGCAGCTCAGACGGGATTTCCCAGGAGATGCTGCACTTGTGATGACTAAACTCCTGTTGAATGATGCAGGCCGTTACCACTGCGAGGTGGTGGACGGACTGGAGGACAAGAGCACTTCAGTTTATCTGGAGTTACAAGGTGTGGTGTTCCCCTACCAGCACCCTCGTGGTCATTACCATCTCAGCTTCCTGGGAGCCCAGCAGGCCTGTGAGGAGCAGGGCTCGATCCTGGCCACCTTCACACAGCTCTTCCAGTCCTGGAAGGAGGGCCTGAACTGGTGCAATGCAGGCTGGCTGGCTGACGGGACAGTCCAGTACCCCATCACCCAGCCCAGAGTGCCCTGCGGGGGGCATGGCCTCGCCCCGGGTGTCCGGAGCTACGGCAGACGACACCTTCACCTTCATCGCTACGATGTCTTCTGCTTCTCCTCTTCACTCCGAGGGAAAGTCTACTATCTTAAGCCCTCTCACAAGATGAACCTGACTGAGGCTCAGCAGGCGTGTCGGGAGGACGGAGCAGAGGTCGCCAAGGTGGGACAGCTCTACGCCGCCTGGAAACTCACAGGGCTGGACAGCTGTgacgctggctggctggctgatgGAAGTGTTCGGTATCCCATCACAAGGCCACGAAGAAACTGTGGCCCCTCGGAGCCCGGGGTGCGCAGCTTTGGCTTCCCACCTCCCCAGCACAAGCATGGAGTCTACTGCTACAAGTGTCACATTCAACGATGGGAGTGACTagctggctgctgctgctcactccTTGGCTGTTTTGGTCGTCTGAATCTGTGATGACGGACGGTTACGTCTTTGCGTTCCTGTGGGGACAACACAAACAATTTGTGAGATAAGACAGCGTCCAAAGCTTGCTTAAACTGAAACTTTTCTGGAGTTTTGTCCGTCCACATTTAAATTTGCAATAAAAATGGCTCTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37112 lncRNA upstream 54217 17494748 ~ 17495773 (+) True G27895
TU37100 lncRNA upstream 84346 17381379 ~ 17465644 (+) True G27884
TU37095 lncRNA upstream 235900 17313888 ~ 17314090 (+) True G27879
TU37093 lncRNA upstream 255039 17292715 ~ 17294951 (+) True G27877
TU37037 lncRNA upstream 377519 17172255 ~ 17172471 (+) True G27840
TU37205 lncRNA downstream 182234 17738435 ~ 17743448 (+) False LOC120555788
TU37215 lncRNA downstream 269663 17825864 ~ 17826910 (+) True G27977
TU37336 lncRNA downstream 315545 17871746 ~ 17876173 (+) True G28066
TU37335 lncRNA downstream 332560 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA downstream 332649 17888850 ~ 17889217 (+) False G28065
XM_039795726.1 mRNA upstream 1570 17534827 ~ 17548420 (+) False LOC120556258
XM_039795725.1 mRNA upstream 1571 17534829 ~ 17548419 (+) True LOC120556258
XM_039796020.1 mRNA upstream 36826 17508105 ~ 17513164 (+) True rlbp1a
XM_039795865.1 mRNA upstream 44884 17497420 ~ 17505106 (+) True slc39a1
XM_039795867.1 mRNA upstream 44884 17497420 ~ 17505106 (+) False slc39a1
XM_039795729.1 mRNA downstream 7530 17563731 ~ 17566207 (+) True mibp2
XM_039795730.1 mRNA downstream 8414 17564615 ~ 17566207 (+) False mibp2
XM_039795734.1 mRNA downstream 23114 17579315 ~ 17587648 (+) False slc30a4
XM_039795733.1 mRNA downstream 23115 17579316 ~ 17589310 (+) False slc30a4
XM_039795735.1 mRNA downstream 23116 17579317 ~ 17587649 (+) False slc30a4
TU36678 other upstream 2063569 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2103598 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4312171 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4439651 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 5518262 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 168347 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 1005694 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1931045 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1941537 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1941892 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile