RNA id: XM_039795731.1


Basic Information

Item Value
RNA id XM_039795731.1
length 2709
RNA type mRNA
GC content 0.47
exon number 8
gene id slc30a4
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17579315 ~ 17595161 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtcatgtGTCTCCTACGTCATCACGTGACTGCGGGAGAAACCAAACTTGCTAGTGTTGCTTCTTGATGCGGAGGTAGCAGTAGCTAGTGTTCCGACCGACTCTGATGTTTACACCACTATTACCATGACAGCCTTTAATTCAACGGTGAACTAAGTTACCACATTCGTAAAGTACATCTGTTAGGTGCTTGCATGCAGTAGAAATGCAAGATTTCAACCTACAAAGATGTGAATGATTACCTAGGAGGACAGTTACTTACAGTCACAGAGCCCACCCGGATATACCTAGTCGTTAAAGATGTCAGGTGGGAACCTGTTGAGCAAGGTGCGGTCAGCCTTTAGGAGAGAGCGGAGCGACTGGGACCTGAGCGACACGGCGCCCTTTGACTTCTCCGACGAGCTGGTGGACGATGACACGCCCAAATTCAACAAGCTGAAGGTTGTGGTCTCCGGAGAGATGTCTGACTACTCTGCTGGAGCTCCGTCCAACGGGGTGGCGGTGAACACGCTGGTGATGGCAGATGATGATGACTCCCTGCTGGACTCTTCTTCCAGCCTGGGCAGCCCGGCTGGGTTAAACATGGACCCCTGTGACAGCTGCACCAAGAAGAGGGAGAGGATCAAACACAAGAGAGTGATGAAAAGGCTCATCATTGCAGCTTTGCTATATTTCCTTTTCATGACAGGTGAAATCATAGGTGGTTACTTGTCAAACAGCTTAGCCATTATGACTGATGCTGTGCACATGCTAACCGATGTGGTGggcattttgttttctctgctgGCTCTCTGGCTCTCCACCAAACCTCCCACAAGAAGATTCACCTTCGGACTGCACCGCCTTGAGGTGGTATCGGCAGTCCTCAGTGTGGTGCTCATCTACATTCTGACGGCCATACTGCTCTATGAGGCGGTTCAGAGGACAGTACACCAAGAATTCGACATAGATGGAGATGTCATGCTCATTACTGCAGCTGTGGGGGTGGCTGTCAACCTCATAATGGGTTTCTTGTTAAACCAAGATGGTCACCTCCACTCTCACGGCCATGGTCACTCTCACGGCCATGGTCACTCTCACGGCTCTGCAGCTGCCTCAAGTTTACAGTCAGCTGGGTCAGGTCAGCAGCAGAGGCAGCACGGCAGCCTGGCTGTAAGAGCTGCCTTCATCCACGCTTTGGGAGACCTCGTCCAGAGTGTCGGGGTGCTCATAGCCGCCTACATTGTCCGCTTCAAGCCAGAGTTTAAGTTGGCAGACCCCATCTGTACCTACATCTTCTCTGTTCTGGTTCTCTTCACCACATTCCGCATCATACGAGACACAATAGTCATCGTGCTGGAGGGTGTTCCCAGGCATCTGGACACCCGTAGAATCAAAGAGGACCTTCTGAAGCTGGAGGACGTCCAATCAGTGGATGAGCTGAATGTCTGGGCGCTGACAGCTGACAAGACTGCAGCACTGGTGCACCTGCAGCTCACGCCCTCTAGCGCCAGCAACTGGGAGGACGTGCAGGCGAAGGCTCGCCACCTGCTGCTTCACACCTACGGTCTCACCAGGTGCACAGTGCAGGTCCAGACACACAGGCTGAGGCCGGTACGCAGTTGTACACACTGCCAGCAGCCCAGCGCCTAAAGAGAGAGACTCGTGTCTACATTGACTTCCACAGTGCATTTCGTGGAGCCAGACGGCAGAGAGTACAGTACAGAGGGCCTAGATGTCGCACCACTGTCACCAGCGCCATAGCAGGTGCCAATAAACGGTatgtaaatgcaaaaaaaaaagactggtgCCAAAGGACACGAAAAACAGAAGATGCACATTTCCAATTAAAAGATCACTACAGCCTCCAGGGACCTTATGCTCGCAAAGCTTAGAGTCTCAGCcgaaaagaatgaaaaaaaagaaatatgctCTTAATTCACCATTAAAGCCTATTTTAACAAgtaactttttttgtatttgactGTTTGATTTATCACAACTTATGTTTTGTCAtcaaatgtaaatttttttacTAGGTGTAAGGACGGTATACTAGGATTTGATTATTTTACTGAGGAAGGCAGCACATGAAAAAAACCTTGTTATTTGATAAAAACAGTTTTCACAGTGCAAATACTGTAAGCTGTCCTCACCACAGGCAAAAGTGAGGCACTTAATCATTGTGTCCTTTAGTAGACATGACATCTCATTAAACACACTTAATCATTATTTTCTTCAGCCAAAGTCTGTTGTAAGGCAGAtttttaaaaagacaacaaCCTTAGATCTTAAAGCTGTCTGCACCGACCAACACTTAAAATACCAACACTTTTATCgctgacattttatttctagCATGTCTCTTAATTAATTGTGGGGAGCACGCAACTGACAATCAAAGTGTGACTGACTTTTTTACAGTGGTTGGACCGACTTCACTATGGTTTTAGCTTCACATTCTATACTCCTCTTTTGTTTGTATCATTAACGGACCGTATGAAAATGCAGTCGGGTTTGTGGAATCTTCAGTATTTCAGAGTTGCTGTGTTTTCAGGGAGGGAGGTATGAGTTGAAATTAGCCGGTAATGGTGTTTAAAGTATTTCTCTGTCAAGTGTTGAGAGGCTGTGGGGGTTTATGGTCAACTTTTCCACATCTCTAACATTAATCAAGGGAAATAGGGAACTGGATCACTGTTTGTTTGTAATAAAGTATTTCATCTTTAGTGTG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14691 SLC30A4, ZNT4; solute carrier family 30 (zinc transporter), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37112 lncRNA upstream 83552 17494748 ~ 17495773 (+) True G27895
TU37100 lncRNA upstream 113681 17381379 ~ 17465644 (+) True G27884
TU37095 lncRNA upstream 265235 17313888 ~ 17314090 (+) True G27879
TU37093 lncRNA upstream 284374 17292715 ~ 17294951 (+) True G27877
TU37037 lncRNA upstream 406854 17172255 ~ 17172471 (+) True G27840
TU37205 lncRNA downstream 143274 17738435 ~ 17743448 (+) False LOC120555788
TU37215 lncRNA downstream 230703 17825864 ~ 17826910 (+) True G27977
TU37336 lncRNA downstream 276585 17871746 ~ 17876173 (+) True G28066
TU37335 lncRNA downstream 293600 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA downstream 293689 17888850 ~ 17889217 (+) False G28065
XM_039795729.1 mRNA upstream 13118 17563731 ~ 17566207 (+) True mibp2
XM_039795730.1 mRNA upstream 13118 17564615 ~ 17566207 (+) False mibp2
XM_039795728.1 mRNA upstream 23124 17549990 ~ 17556201 (+) False LOC120556259
XM_039795727.1 mRNA upstream 24560 17549990 ~ 17554765 (+) True LOC120556259
XM_039795725.1 mRNA upstream 30906 17534829 ~ 17548419 (+) True LOC120556258
XM_039795021.1 mRNA downstream 14300 17609461 ~ 17624273 (+) False LOC120555872
XM_039795023.1 mRNA downstream 15152 17610313 ~ 17624532 (+) True LOC120555872
XM_039795908.1 mRNA downstream 99947 17695108 ~ 17702125 (+) True cops2
XM_039795909.1 mRNA downstream 99947 17695108 ~ 17702125 (+) False cops2
XM_039794850.1 mRNA downstream 107142 17702303 ~ 17720257 (+) True secisbp2l
TU36678 other upstream 2092904 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2132933 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4341506 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4468986 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 5547597 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 129387 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 966734 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1892085 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1902577 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1902932 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile