RNA id: TCONS_00074934


Basic Information

Item Value
RNA id TCONS_00074934
length 2965
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_037404
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45548787 ~ 45553378 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgctaatgcttaataaattatttatagtgtgtagttattataaagtgttaccatgtttTTTTAATGGCTGAGTCCTAAATATTGACCACTTTTAAGTTGGTTTGATTTTCTATTTTGCAAGTTTTACACCATGGCCACAATTAAAAGCTTTTATAACATTTTCTTAAAGATTTCTATTGTTTTAGTCAAGGAAAACAAAACAGTGCACAGGTTTGGCATGACAATTTTAGGCAATTTTTAGGTGAGCTATTCCtttaaatcattcaaatatatGGCCGCATTTACAATAGATTCAAATCCCCcattttagtttcatttcttTCAATGTGGAACAGATATTACTTATGTTAACCAATTGGTTTCAAGCCTCATTCATATATGGAAATTAATGTCATATGCACTTGTGTCTGCTTTGTGAACAGACGGATATGATATTCCCGTCAATCCAATCCATTGCTGAATAAGTGATGGTGATGAATTTCATCAACTCATACACGAATTGAGATCGCACGACTTTTTGATGTCACATTATTAGAAGACGAAGTCTGTCGTCATCTTTTTTCCCTCTGCCCTTTAACTCTAAATTTTGGctgacctttaaaaaaaaattttaaatcgcACCATTTATACTTCctttccagcatatgcttttctGGGTCAGTATCTTAGGTGCAGATATTGGTCAGTTTTAAAAGATGTAAGCTGGAATCACATATGGTCAACCAATCAGAATTGGCCATCAAGCCCAGCACTGTAAATGCGACTTTTACAGTAATGATGGGCCACAGACTGTGCTCTTCCATGTAATCAGATCCTCATCACACTCTGCCAATGCTATCATTCCATTCCCGAACCCACCTCGGTAGCATCAGGTTTCTCCAGCAggatattttgttgatttcaaATCTTTTAAAGAAACCAGCAGTATGCGAGTTTGTCcattggtttgtgtgtgtttgttttgtgtaccTGCTGCTGAGCCCAGTCGGCATTCTGCAGAGAAAATTCGGCAACAAGACTGAGAGATTTCTGTGGAATCTTTACTCTAATATGCTGTCATATATTCTCaatatggattattagattatctGACATACAGttgttggacaatgaaactggtTTTAAAGcccaataattcattagtatggtgtaggggCTTCTTTTGCGTCCAGTACAGCATCAATTCGTCTTGAGAGTGACCCATACAAATCCTGCACAGTATCCAGaaggattttgagccattcttcttgcagatAAGTGGCCAGGTTTTGATTTAATGCTGGTGGAGTTAAATGtttcctccaaaacaccccaaagtggctcaataatatttagatctggtgactgtgcaggccatggagGATGTTCAGCTTTaagttcatcaaaccactctgtcaccagtcttgctgtttGTAttagtgcattatcatcctgatacttGTCACCGCCTTCAGTATCCAATGTTTAAAACCATTGTGTGCACATGGTCCTTCAGAATGGTTCAGTAGTCCTGATGCGCCAAATTTAGCaatgaaacctccaacactaaattggccagtgtttcagtttaAAATATGTAGAATCCCTCCATTGACAAGTATATTGTGGTAATAGtactaaatgctgctttgtttagtCTCATCACACTCTGCCATTGCTTTaatttcaccccccccccccccccccatcaatGGCATCAGGTTTTTCCAGCAGGATATTTTGTTGCTTTCAAATCTTTTAAAGAAACCAGCAGTATGCGAGTTCGTCCGTCTGTCCGTTggtttgagtgtgtttgtttcgTGCACCTGCTGCTGAGCCCAGTCGGCATTCTGCAGAGAAGTTTCGGCAACAAGACTGAGAGATTGCTGTGGAATCTTCACCAAAGATgtcaatttattttcctttggaaGCGTTTAAACAAATTGagagtattttttaaaaaacaaaacggtTATTGGTGCAAAGATTGTTCAGCATTTTACGGTCCTGCCTCGGTTTGagttgtgttgtttttatatttgctaatgtatttttatttgtattctttTTCCAAGATGTGCATTTGAGTTGGATCAGTCAGGACTGGATTTAGGACAGGATTGTCTTTCTCAGTATTCTGGTTCACAGATGGATGTACTGCTGTAAATATATCGTGACCCTCTCTGATACAGTTAGACCCCTTCCGTATGTGCTActaattttcattttgtttttccacTCAAAAAGCAACATGCATTTTCGTTTTTAAGGTCTCGAAATGCCAGGGCGGCCGTGTCCTTGTCCTGTAATGTATTTTCTGACGGACCCATGTGAGCGTTCAGGGATCTGCAGTACTGTAATGATTAATGACTGTAGACTTTGGCTCCTTTTTGCTCTAATGGAAACGATTACGGCCTGAAATTAATGAGCACAGTCGGTTCTACGTAAATGTGGCTCAGCAAAAAGTAGATCTTTCTGCTGGTGACATTTTTCAAGGACGGGAgacttatgaaaaaaatatagtttctttcttttgcatcattttattttcattttcacctctcctgctgtctGTTTTGGGGGGGATTTTGATGGCGCAAGATGGCGCCAGTGGATGATGTCACgtttttcttccctttttttgttgttgttcttttggGAATCTGAGCCGTGTCTTCACGAAAAGTCCTGACTTTCGTCCCCCCTGGTCCTGACCGGCCCGTTTCTAAACGTCTTGTGATTTGGTGACTGTACAGTGGAGTTCGGCGGTGGTCAAGCTCGATCTCGGACTTGGTCCACCCCGTCTTTTGCCTGTCCTTCGTAATATCCACATGGGTCACCTGCATGAGCTACTTCACCGAAGCTGCACCCAGCATGACGACATACTTTAAAAATGGACTTGTATGTagaaaaaaaggaacaaaaaataGATCTATATATACACaaggaaaaaaacaaaggaaTAAAAATGATCTTAGTTTACCT

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074933 lncRNA upstream 287026 45261384 ~ 45261761 (+) True XLOC_037403
TCONS_00075192 lncRNA upstream 431946 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00075191 lncRNA upstream 503796 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00073584 lncRNA upstream 550212 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00073574 lncRNA upstream 1079358 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075193 lncRNA downstream 311889 45865267 ~ 45879991 (+) False XLOC_037410
TCONS_00074935 lncRNA downstream 312013 45865391 ~ 45868067 (+) False XLOC_037410
TCONS_00075194 lncRNA downstream 325281 45878659 ~ 45884134 (+) True XLOC_037410
TCONS_00075195 lncRNA downstream 825331 46378709 ~ 46395404 (+) True XLOC_037411
TCONS_00075196 lncRNA downstream 861780 46415158 ~ 46431296 (+) False XLOC_037412
TCONS_00073591 mRNA upstream 7420 45493341 ~ 45541367 (+) False XLOC_037402
TCONS_00073588 mRNA upstream 7791 45227028 ~ 45540996 (+) False XLOC_037402
TCONS_00073590 mRNA upstream 7791 45428041 ~ 45540996 (+) False XLOC_037402
TCONS_00073587 mRNA upstream 425797 45112537 ~ 45122990 (+) True XLOC_037401
TCONS_00073583 mRNA upstream 550065 44994214 ~ 44998722 (+) False XLOC_037398
TCONS_00073594 mRNA downstream 52032 45605410 ~ 45623647 (+) False XLOC_037405
TCONS_00073595 mRNA downstream 52039 45605417 ~ 45667487 (+) False XLOC_037405
TCONS_00073597 mRNA downstream 52162 45605540 ~ 45667259 (+) False XLOC_037405
TCONS_00073596 mRNA downstream 52162 45605540 ~ 45667259 (+) True XLOC_037405
TCONS_00073598 mRNA downstream 127424 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073592 other upstream 8194 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 214682 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 484518 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073585 other upstream 551364 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073582 other upstream 616494 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073600 other downstream 268091 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073602 other downstream 867649 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073638 other downstream 4231942 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 4535622 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 5246979 50800357 ~ 50800473 (+) True XLOC_037446

Expression Profile

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