RNA id: XM_039795756.1


Basic Information

Item Value
RNA id XM_039795756.1
length 2017
RNA type mRNA
GC content 0.45
exon number 12
gene id luzp2
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14283159 ~ 14463293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGCCGAGCCACTGTGTTGCATCTGTCTGCCTCGCTGCTTGTGTGtctgggtgcgtgtgtgtgtgtatgagagtgcGCTAAAAAACCCAGCAGCCAGTGGGAGAGCTAGAGAGTCGGGGAGAGAGACACGGGGGGGAAAGGCAAAAAGCATCTGAGAAGGGAAAAGGAACGGGAGTGTGAGACAGCTATGAAATTCATCCAAGCTATTTGCTTACTGCTTCTCTGTCCAGCTTTGAGCCTCAACACCAGACAAAGCTATGATGGCCTGGAGAAGAAGCTAAAGGAAGTCTTCAGTGAACGGAGCAGCATCCTGCACCAGCTCTCCAAGACATCAAAGGAGCTGGACAGCATAAAAGGCAACCTTCAGTCGCTGAAAAATGATGACTCTGTGGCCAAGAAGGATGTGCAGCGGATTCTGGAGCTCAGCCACAAACAGAGAGAGGAGATGAAGTCCCTCCAGGCAGCCTTGCAGAAGCAGCTGGATGAGGCAAATGAGAGAGCAGAGAAGCAGCAGGCCACGATCAAATTTCTTAAAGtggagatggagaaaaaaaccaaaatcatCAAGGATTTACAGCAAGAGAACAAGAGCTTGAAAAACAAACTGCTCTCGGGACACAAACTTTGTGACGCCTATGCTGAAGAGTCCAAAAAAATCCAGGCTCAACTGAAAGAACTGCGGTACGGGAAAAAGGATTTAATTTTTAAGGGGCAGCAGCTAATGGACTTGGAGCACAAGCTAACTGTAGCCAAGGAAGAACTGGAGAAGACTGCACTGGATAAGGAGTCTCAGCTGAAGGCGCTGAAGGACACAGTTCACATCTGCTTCTCAGCTGTCCTGCACAACCAGCCCAGCAGCAGTCCCAGATTCCCCACCTCCCCCACCCACTTGTTCAGATACTCATCACTCATCAACAGCTCCAGAGTCACCTTTCAGCAGCCACATGCCAAGGATATCTCTAAAGTTCAGAGAATTGTCACAGCCAGTAAATCACCCATGAACATCGGAGTAATGAGCAGAGAGAGCGGCGGAGTTAAAGACTGCCAGATGGAAAAGACTGGGGGCGACTGCTTCCAGAATCAGACGGAAGAATCAAGCCCAGCAAGTAAAAAGCTACCAGAGCCACAGCAGCAAAGGAGCCAAGCGCAGACTGAAAAATCCACCACAAAGCTCGCAGACGACAGCGTGAAGGCAGAGGGAGGCAGCAGCAAAAAGACAAAGCCACATGAATACAACTGAGCGGACGGCATATCATCCCAAATGCAGAGCTCCTGTATTGCCTGAAGGATCTTTCTAAGAGCACACACTTGCGCACtctcacaaaaaacaaatgtgcgcccacacactgacacacacacgtttaaacacacacacacacacacacacacacacacacacagctacacgtACGCATATCAGCATTGTTTGCAAAAGCTGAGACACTGGAATTGTCAACAAATTTCAAACTGTCATCTGCAAACCTCCATAGTAAAATGGCATGCATTCTAGaaattctttttaaaaaggtagcAATGGCACTGGTAACTTGTTTCATGATTGTTCATTTGTTGTTTACTTATCTGAGTTTTATTCTGAGTAAGGACACTGCGTTCTAAATGTGTGATCTTTCTAGAAAAATCCCTTTGCACTGGTGAGGTCTGACAATGTATCCTGTTATAAGTATATCAATTgacacataaaaaatactactactattactactacccAACTTAAAATATTGTTTGTCACTCATTGTAGCAAGGTTAATTTACTCTTCCACATTTTGAATTATAGAGGCTCAAGTTGGCTGGCCAACTGTTCAACATTTAATATTTCAGCACTCAAGGCAAAGAGCCAAAGACTCACAATGGGTCGTCTCCCTGAGAATGTGCCATGCACTGAGTAGTAATTCCTAGCTACATGTATCTGTGTTATTTGACCTTTATGTGTCCTTTCAATAAACTGTAATTTTCAGTAAATGTGTGAAGAATAAATGGTTATTCGTGGGAAAGAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36368 lncRNA upstream 58925 14223309 ~ 14224234 (+) True G27306
TU36310 lncRNA upstream 281512 13997113 ~ 14001647 (+) True LOC120555409
XR_005638709.1 lncRNA upstream 281725 13999535 ~ 14001434 (+) False LOC120555409
TU36293 lncRNA upstream 346431 13928199 ~ 13936728 (+) True G27241
TU36294 lncRNA upstream 346431 13928199 ~ 13936728 (+) False G27241
TU36387 lncRNA downstream 3185 14466478 ~ 14466680 (+) True G27320
XR_005638843.1 lncRNA downstream 110904 14574197 ~ 14577703 (+) True LOC120556358
TU36395 lncRNA downstream 113150 14576443 ~ 14577250 (+) False LOC120556358
TU36427 lncRNA downstream 220540 14683833 ~ 14684116 (+) True G27356
TU36433 lncRNA downstream 267524 14730817 ~ 14731646 (+) False G27358
XM_039795637.1 mRNA upstream 188838 14092864 ~ 14094321 (+) True cdkn1ca
XM_039794847.1 mRNA upstream 227665 14048291 ~ 14055494 (+) False traf6
XM_039794848.1 mRNA upstream 227665 14048370 ~ 14055494 (+) False traf6
XM_039794849.1 mRNA upstream 227665 14048556 ~ 14055494 (+) True traf6
XM_039796070.1 mRNA upstream 426736 13809935 ~ 13856423 (+) True lrrc4cb
XM_039795301.1 mRNA downstream 239686 14702979 ~ 14706234 (+) True fibinb
XM_039795300.1 mRNA downstream 245269 14708562 ~ 14734747 (+) True bbox1
XM_039794712.1 mRNA downstream 388992 14852285 ~ 14860024 (+) True LOC120555721
XM_039794713.1 mRNA downstream 389023 14852316 ~ 14864789 (+) False LOC120555721
XM_039795511.1 mRNA downstream 426097 14889390 ~ 14965062 (+) False kcna4
TU36145 other upstream 1045340 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1172820 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 2251431 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 4423159 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 4678723 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 978184 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 1011871 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 3261255 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 4098602 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 5023953 19487246 ~ 19487533 (+) True G28581

Expression Profile