Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073594 |
| length | 790 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 3 |
| gene id | XLOC_037405 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 45605410 ~ 45667487 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042073 | intraciliary transport | biological_process |
| GO:0070507 | regulation of microtubule cytoskeleton organization | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0031113 | regulation of microtubule polymerization | biological_process |
| GO:0030030 | cell projection organization | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0036064 | ciliary basal body | cellular_component |
| GO:0030992 | intraciliary transport particle B | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005930 | axoneme | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-040426-1146 | Predicted to enable microtubule binding activity. Involved in regulation of microtubule cytoskeleton organization. Acts upstream of or within several processes, including animal organ development; cerebrospinal fluid circulation; and regulation of microtubule polymerization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be part of intraciliary transport particle B. Predicted to be active in axoneme; centrosome; and ciliary basal body. Human ortholog(s) of this gene implicated in Senior-Loken syndrome. Orthologous to human TRAF3IP1 (TRAF3 interacting protein 1). |
| ensembl_id | ENSDART00000136444 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00074934 | lncRNA | upstream | 52032 | 45548787 ~ 45553378 (+) | False | XLOC_037404 |
| TCONS_00073593 | lncRNA | upstream | 52032 | 45551068 ~ 45553378 (+) | True | XLOC_037404 |
| TCONS_00074933 | lncRNA | upstream | 343649 | 45261384 ~ 45261761 (+) | True | XLOC_037403 |
| TCONS_00075192 | lncRNA | upstream | 488569 | 45112496 ~ 45116841 (+) | False | XLOC_037401 |
| TCONS_00075191 | lncRNA | upstream | 560419 | 45039765 ~ 45044991 (+) | True | XLOC_037399 |
| TCONS_00075193 | lncRNA | downstream | 241620 | 45865267 ~ 45879991 (+) | False | XLOC_037410 |
| TCONS_00074935 | lncRNA | downstream | 241744 | 45865391 ~ 45868067 (+) | False | XLOC_037410 |
| TCONS_00075194 | lncRNA | downstream | 255012 | 45878659 ~ 45884134 (+) | True | XLOC_037410 |
| TCONS_00075195 | lncRNA | downstream | 755062 | 46378709 ~ 46395404 (+) | True | XLOC_037411 |
| TCONS_00075196 | lncRNA | downstream | 791511 | 46415158 ~ 46431296 (+) | False | XLOC_037412 |
| TCONS_00073591 | mRNA | upstream | 64043 | 45493341 ~ 45541367 (+) | False | XLOC_037402 |
| TCONS_00073588 | mRNA | upstream | 64414 | 45227028 ~ 45540996 (+) | False | XLOC_037402 |
| TCONS_00073590 | mRNA | upstream | 64414 | 45428041 ~ 45540996 (+) | False | XLOC_037402 |
| TCONS_00073587 | mRNA | upstream | 482420 | 45112537 ~ 45122990 (+) | True | XLOC_037401 |
| TCONS_00073583 | mRNA | upstream | 606688 | 44994214 ~ 44998722 (+) | False | XLOC_037398 |
| TCONS_00073598 | mRNA | downstream | 57155 | 45680802 ~ 45697644 (+) | True | XLOC_037406 |
| TCONS_00073599 | mRNA | downstream | 166240 | 45789887 ~ 45794194 (+) | True | XLOC_037407 |
| TCONS_00073601 | mRNA | downstream | 215613 | 45839260 ~ 45843479 (+) | True | XLOC_037409 |
| TCONS_00073604 | mRNA | downstream | 1020986 | 46644633 ~ 46684539 (+) | True | XLOC_037414 |
| TCONS_00073605 | mRNA | downstream | 1121701 | 46745348 ~ 46799620 (+) | True | XLOC_037415 |
| TCONS_00073592 | other | upstream | 64817 | 45540477 ~ 45540593 (+) | True | XLOC_037402 |
| TCONS_00073589 | other | upstream | 271305 | 45227101 ~ 45334105 (+) | False | XLOC_037402 |
| TCONS_00073586 | other | upstream | 541141 | 45064155 ~ 45064269 (+) | True | XLOC_037400 |
| TCONS_00073585 | other | upstream | 607987 | 44996269 ~ 44997423 (+) | True | XLOC_037398 |
| TCONS_00073582 | other | upstream | 673117 | 44932175 ~ 44932293 (+) | True | XLOC_037397 |
| TCONS_00073600 | other | downstream | 197822 | 45821469 ~ 45821585 (+) | True | XLOC_037408 |
| TCONS_00073602 | other | downstream | 797380 | 46421027 ~ 46431133 (+) | False | XLOC_037412 |
| TCONS_00073638 | other | downstream | 4161673 | 49785320 ~ 49785437 (+) | True | XLOC_037435 |
| TCONS_00073648 | other | downstream | 4465353 | 50089000 ~ 50090257 (+) | True | XLOC_037440 |
| TCONS_00073655 | other | downstream | 5176710 | 50800357 ~ 50800473 (+) | True | XLOC_037446 |
