RNA id: XM_039795781.1


Basic Information

Item Value
RNA id XM_039795781.1
length 1608
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC120556297
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17173886 ~ 17185740 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

accctgaacacaccacagtCTCAGCGGCAGGCGGGCCATTCTTCAGCTTCTCCTTCGCTTTTGGCACCAATGTCggaggtgtttgtttgtgcctGGAAGAAATGGACTCTGGCAATGCACGAATttgatcattcagagatccgaTCAGTTGAGTCTGTGAATGGCGCCAAAACAGGACCCTAAACCTAAATTTCAAGAAGGTGAAAGAGTCCTGTGCTTTCATGGGCCATTGCTCTATGAGGCAAAGTGCGTAAAGATCAACATAAAGGATAAACTGATTAAATACTTCATTCATTACAGCGGATGGAACAAAAACTGGGATGAATGGGTTCCTGAAAGCAGAGTTCTCAAATATGTGGACAGCAACCTTGCGAAACAAAAAGAGCTTCAGAAGGCCAATCAGGACCATTATGTTGAGGGAAAGATGAGGGGTTTAGCACCAAGCAAGAAGATTGCTGCTGTGCAGCAGAAAAATGTTGATCTGAAAGTGAAAAAGGCAAAGCAGAAGACCCCAGGGCCGGGTGAAGGCACCAGCAGCGGAGAAACGCCGCAGGGGCCGCGGAAGAAAAGGGCTCGGGTCGATCCCACTGTGGAGAGTGAGGAGATGTTCACCAATCGGGTAGAGGTGAAGGTAAAGATCCCTGAAGAGCTGAAACCCTGGCTGGTGGACGACTGGGACCTCATCACCCGACAGAAACAGTTATTTCATCTGCCTGCTAAGAAGAATATAGAGACCGTCTTGGAGGACTATGCAAACTATAAGAAATCAAAAGCAAACTCTGACAATAAGGAGTTTGCGGTAAACGAAGTGGTAGCAGGGATTCGGGAGTACTTCAACGTCATGCTAGGCACCCAGCTGCTTTACAAGTTTGAGAGGCCCCAGTATGCTGAGATCATGGCTGAACACCCAGACATGCCAATGTCTCAGGTGTACGGAGCTCCGCACTTGCTACGCCTTTTTGtTCGTATTGGAGCCATGCTGGCCTACACTCCACTGGACGAGAAGAGTCTGGCTTTGCTGCTTAGTTACCTCCAAGATTTCCTCAAGTACCTGGTGAAGAATTCCTCCACCCTCTTGAGTGCCACTGATTACGAGGTCGCGCCCCCAGAGTACCACCGCAAGGCTGTCTGAGAGCTCTCCGGCACCTCTCCCACACCACATGTACTGTAAAATAACCATTACTACCCGAGTGCAAACTCGGATGAGATTTTTCACTTCAACTGATAAACTTTCACAAAGGTCTCAGGAGCTTGTCACAGTTAAGaagttcaacaacaacaacacatttaggaaacctttttTTATGCTgactcctcttttctctccctttttcctttttatttctcaCTTCTttgaaaagacacaaaaaaatgattttccgTCGACAAGTTTCCACAAGCAgctgtttggtgtttttgtgcATTCCACCTGATAGATATTTGTTACTGTTGCATGTTTGTATTTATTAGTGTTTCTTCTGCCACATGAGGTGCAATTTATTGCTGGACCACAAGGTCAGCACTCAGCAGTTGATGTTTTTGTATCCGTAtcgtttttgtatttgtatcaatttgtaaaaaaaaaaaaaaatgtttctacacAATCTC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37069 lncRNA downstream 52306 17021921 ~ 17121580 (-) True G27865
TU36964 lncRNA downstream 531077 16638917 ~ 16642809 (-) True G27775
TU36957 lncRNA downstream 614881 16558638 ~ 16559005 (-) True G27768
TU36956 lncRNA downstream 615365 16557533 ~ 16558521 (-) True G27767
TU36913 lncRNA downstream 763950 16409470 ~ 16409936 (-) True G27729
TU37076 lncRNA upstream 10040 17195780 ~ 17284509 (-) False LOC120556401
TU37127 lncRNA upstream 107681 17293421 ~ 17294886 (-) True G27909
TU37151 lncRNA upstream 322383 17508123 ~ 17510825 (-) False G27925
TU37227 lncRNA upstream 377933 17563673 ~ 17605770 (-) False G27983
TU37226 lncRNA upstream 378008 17563748 ~ 17566267 (-) True G27983
XM_039795343.1 mRNA downstream 1417 17107473 ~ 17172469 (-) False uacab
XM_039795344.1 mRNA downstream 1417 17115639 ~ 17172469 (-) False uacab
XM_039795342.1 mRNA downstream 1417 17116992 ~ 17172469 (-) True uacab
XM_039794781.1 mRNA downstream 190688 16949641 ~ 16983198 (-) False LOC120555746
XM_039795989.1 mRNA upstream 7773 17193513 ~ 17198612 (-) True LOC120556401
XM_039795828.1 mRNA upstream 14435 17200175 ~ 17263062 (-) True pias1a
XM_039796253.1 mRNA upstream 89238 17274978 ~ 17283831 (-) False skor1a
XM_039796252.1 mRNA upstream 89238 17274978 ~ 17283831 (-) False skor1a
XM_039796251.1 mRNA upstream 89238 17274978 ~ 17283831 (-) False skor1a
XR_005638870.1 other downstream 1533926 15639769 ~ 15639960 (-) True LOC120556584
TU36517 other downstream 2329981 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 2703541 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 3884622 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 4078120 13069996 ~ 13095766 (-) True G27075
TU37150 other upstream 322383 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 324210 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 324388 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 1032382 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 1196965 18382705 ~ 18383642 (-) True G28265

Expression Profile