RNA id: XM_039795794.1


Basic Information

Item Value
RNA id XM_039795794.1
length 4449
RNA type mRNA
GC content 0.43
exon number 11
gene id slc1a2a
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13697646 ~ 13723065 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCTGTCAGACCTCCAGGATAGTCAGTTTACCTTTACACACCTCCCTGAATCTGTGATTGTGGATATACATCCAACGCTGAGGAAGAAGTGATCTGCAGATTTTTAAGGACCGAAGAGCCCTTCCTAAAGGGACAAAAAATACTTGTTGGAGGTTCTTACTGGATTTACTAATGCATGAGCCATGACTCTGTTATATTCTTCACCGACGCAGATGGCTGTGTAGTAGCTCTGCACTAATACAATTTCAATCCAAATCAACATACAAAACAACTGTGCCAACAAAATGCAGAAGCAAGTGGAGGTCAGGATGGATGAGACCCAAATGGAGCCCATAGTGGATGCTCCAGAGGGTTGGTGTAGCAGTTTTTGCGATAAAGTCATGAAGAACATGGTTCTCACTCTCACAATCCTGGGTGTGTTTCTGGGTTCCATTGCTGGAATGCTGCTGCGGCACGTATCGCCTCTCCCTCCGGATGTTATTATGATCATCGCCTTCCCTGGAGAGATCCTGATGAGGATGCTGAAGATGCTTATATTGCCTCTTGTTGTTTCCAGTCTGGTCACAGGACTAGCCGGTTTGGATGCCAAATCCAGCGGCCGCTTAGGCACCAGGGCCATGGTGTACTACATGTCGACGACGGTGATCGCAGCCGTCCTCGGAGTGATCCTGGTGCTGCTCATCCATCCCGGTAACCCCAAGCTGAAGGCTAATCTTGGACATGGAAAGAAGAACGACGAGGTGTCCAGCGTGGACGCTTTCTTCGATCTCATCCGAAATCTTTTCCCAGAGAACTTGGTGCAGGCCTGCTTTCAGCAGATCCAAACAGTAATGACCAAAGTACCAGTGCCCACTAACAGAACTAAAGCACCTCCACAGTTCACAATTAAAAGGTCGCTTCAGTTCAAGGGTGGGATGAACGTCCTGGGTTTGATTGGATTCTTTGTCGCTTTTGGAGTTATTATGGGGAAAATGGGAGAAAGGGCCAAGCTGATGTTGGAGTTTTTCAATGTCCTGAATGAGATTGTTATGAGGCTTGTTGGCGCAATTATGTGGTACTCCCCTTTTGGTATTGCCTGCCTCATCTGTGGAAAGATCATCTCCATTGCAGACTTGGAGGTGGTTGCGAGGCAGCTGGGGATGTATATGGTCACTGTGATAGTGGGACTAATCATCCACGGAGGCATCTTCCTTCCGCTGATATATTTTGTGATAGTAAGACAAAACCCCTTCACGTTCTTCATGGGAATATTCCAAGCTTGGGTTACGGCACTTGGAACAGCGTCGAGTGCCGGTACCTTGCCTGTCACGTTCCGATGCTTAGAGGAGAACCTGGGCATCGACAAGAGAGTAACACGCTTTGTCCTCCCAGTGGGTGCCACCATCAACATGGACGGCACGGCGCTTTATGAGGCTGTGGCTGCCATCTTCATCGCTCAGATGAATGGGATCAACCTCGACTGGGGCCAGATTATTACTGTCAGTATGACAGCCACCCTGGCCAGTGTTGGAGCAGCGAGTATCCCCAGTGCTGGACTTGTGACCATGCTTCTGATCCTCACAGCGGTGGGTCTGCCCACTCAGGACATCAGCCTCCTGGTCGCTGTCGACTGGCTGCTGGATCGTTTCCGTACCTCGGTTAATGTGGTTGGCGACTCCTATGGAGCAGGTATCGTGTACCACCTTTCCAAGCACGAGCTGGACTCCTTCGACCAACAGGCCCGGATGGATGAACTTGAGATGACAAAGACACAATCCTTCTATGAAAATAACAGCAACCAGAATGTTTACACTAACCACAACTCAATCTTGATAGACGGCTGCAAGTTAGATGATCTCGACAATTGCTTACAGGTCACCATGGGCAAAAATGGCAACACTGCAGGGTTCTCTCTTGTTGAGGAGGGACCATGGAAATGCGAGTGAAGCAGATCCAGTGCTGCTGCGCCTTACCCTGAGGTCCAACAGCTTTTACTTTCTGCCGACACGACtataaaaatcaacaaaaaacatcacaaaaaaacgaagaagaaaaagtgaaGAGTCGGACAGtctttttctttcagttacccatCCGGGTAGCTACTGGAGCAGACTACAGATGATTCCCCAAGTTGTATTAGATCTTGCATTTGCACTAACTAGACACAAACTGTAATGAAGTGGTGCATGTCATGCACTTTGTACAGAAGAATAAATCGTTCGGTTGACTACACTCAGGGCCTTACTTAGCTTCCTGTTCTGTCAACGAGAACAACAAGAACTATTCAACCTTGTGCAACatctcatttttcttttgtattgaAGCATTTTCTTCGTAGCTTAAAGGGCAGAGAGATGATGTGTGGATGATGGCCTTGCcagttacatttaaaacaaggACGAAGTAAGAGAAGATGTAAAGGTTGGTGTAAATAAGTCAGAACAAATGTTACAGATCAGCTTTCATTACTGAATGGTTTGTGACTAtcaatgtgtatttgtgtatttctgTATTCTGTGATGCTCTGTGTTCTCATAAAATGCCCACGAACACTGGACCAAAGGTTCAAAATAATGCAAACTGGGTTTATGAAAACAGAACAGTGCTTCCGGTGGCATTATGATACGGGATGGTTAAACACTGCGTTACCTTCGGCTGTTTGACTTATGGGATTACATCTTgatgtcacacacacctggccaaGCCTAATAAGCAAAGCTTAGGACTTAGAACATAAGAGCAGAGGGTGTGACCTCTAAATGTTGCAACAAACAGTGCAGGGTGTGTGGCAGAGAGCTGTAAGGCAGAAATAGTATGTGAAGGGCGCCCCCgcagttattattttttttttgtatgtatgttcTTTATGTGTGAAGCACTGAGTTTCCGTTTGTAGTCAAAACGTATGCCTGTGTACTGGGAtttctgtgtgttcatgtgtgtttctgagaggaagagaaggcTAAACAGGGAAGAATGTTGGAGGTTcaacaagagagaaaaaaaaagggtgggCGTCTCTCAAACTCTCAGCAGGCTAGTGCATtgctctgtgttttctttcaaaCTGTTTATTTCTTTGCTATATTGACAACCTTGCCTTGACGATGTCAACTGCAGAGTGCAGTCAGTGTGATGACTAACACATTTCCGGATAAAAGTTACCACTATTCATTTCAATAGAATATTGGGACTCACATTTTAGTAGAAGAAGTAAATATTCTCCACCTACCAGCTTTACTACACTCAAAGCGAGGACGGCTGGGCCTTCCTCACAAGATATCACTTAGATTTTGCAGAATGTAGTTTTTACACCGCAGATTTacataaataagaaataaaaagctTGTAATTACATGTATGAGTTAAGTAGCTGTGACGTCTGTTTAGCAAGTGCACCCTAAATTCTGCCTCCAGCCCTCGCATAAATCTGAAGCCGTGACAACAAGGTCATTGGATGTTGGCTGAACATGTTTTTGAGTTTATCTCCATGTAGCAACCAAGCAGTAGTTGAGTGTGGTTCAAACCAAGGTTAAAACAGGAtaattgatttctttttttcatataaGCGACGGCTTATATATTCATGTTTAAAGTGCCTCCTTGCACTTTGTGTATATACTCTCCTTAGATAAAGTGTATAATGTATAGGATTTGACATTTTATGTCATCTATCAGACTTGTTTTTGCTATGCTAAAAGTTTCTATAAAGACTATAACTATTTACGTATGCAATAATGTTAGTACAATGTTAATTTTCCTTTCATGGGCCACTCGTCCCAATAGGTTGTGAATTTAgggttatttatttacatacaaTGCATTCAAGTGATctgttttttaaagaaactaCTGAGCATCAAATGTATGTCAAAGAagaaaagtccaatatttctcccCTCTTTGCTGAGTTAATGTTGTTACTTATTATTTAAGTGTTATAAGCACATTAAGGCAGTTTTGTGCAAGCCATCCAGTGTTTGGCTCAAGCACCACCTTCCTCTAAAATGGAGTCTTCCTCAGTTATCAGCATACCCTGATTCATGTCAAAATCCTGTTATCGATTAAATCATCACATCACTTTTCCATCTATTGCATTTGTTGTTGGGCCTTGTTCTTAAAAGGAATATGTTCTTAAACGACTGGCCTAGTGAAGCAGGTGTTTTCTATGAGCAGGTGAAATTGTACAATCTTTagataataaaacatatattttctatctttctttTTGATTCAATGCACATATCGGTCCAAGAATGTATTCAACGTTGTCCTTGTGTCTGTTCCTTGTGATGCAGAACGTTCTTTTGACTTTGACTAAATGCAAGCAGGATTGAATGCACTCGTACTAAATAAACTATAACAGAGCATAAACAATATTTGACAGGCAAATGGACTGAAAGTGTGTCAATGTTTAAATACTTGTGTGTAAATATTAATGGGAgcaaataaatgtttattgatGA

Function

GO: NA

KEGG:

id description
K05613 SLC1A2, EAAT2; solute carrier family 1 (glial high affinity glutamate transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36229 lncRNA upstream 32256 13675954 ~ 13676613 (+) False slc35c1
TU36225 lncRNA upstream 57374 13650883 ~ 13651495 (+) True G27190
TU36214 lncRNA upstream 290715 13417937 ~ 13418154 (+) True G27179
TU36199 lncRNA upstream 306934 13401726 ~ 13401935 (+) True G27164
TU36198 lncRNA upstream 317505 13391156 ~ 13391364 (+) True G27163
TU36269 lncRNA downstream 14118 13737183 ~ 13744451 (+) True G27220
TU36287 lncRNA downstream 129002 13852067 ~ 13854431 (+) False lrrc4cb
TU36293 lncRNA downstream 205134 13928199 ~ 13936728 (+) True G27241
TU36294 lncRNA downstream 205134 13928199 ~ 13936728 (+) False G27241
TU36310 lncRNA downstream 274048 13997113 ~ 14001647 (+) True LOC120555409
XM_039795666.1 mRNA upstream 12102 13678132 ~ 13696767 (+) True si:ch211-102l7.3
XM_039795667.1 mRNA upstream 12102 13678132 ~ 13696767 (+) False si:ch211-102l7.3
XM_039795669.1 mRNA upstream 32448 13671477 ~ 13676421 (+) False slc35c1
XM_039795668.1 mRNA upstream 32448 13672466 ~ 13676421 (+) True slc35c1
XM_039795203.1 mRNA upstream 437651 13252578 ~ 13271218 (+) False spg21
XM_039795716.1 mRNA downstream 27351 13750416 ~ 13765627 (+) True LOC120556255
XM_039796070.1 mRNA downstream 86870 13809935 ~ 13856423 (+) True lrrc4cb
XM_039796071.1 mRNA downstream 124995 13848060 ~ 13856423 (+) False lrrc4cb
XM_039794847.1 mRNA downstream 325226 14048291 ~ 14055494 (+) False traf6
XM_039794848.1 mRNA downstream 325305 14048370 ~ 14055494 (+) False traf6
TU36145 other upstream 471050 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 598530 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 1677141 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 3848869 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 4104433 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 1718412 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 1752099 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 4001483 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 4838830 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 5764181 19487246 ~ 19487533 (+) True G28581

Expression Profile