RNA id: XM_039795800.1


Basic Information

Item Value
RNA id XM_039795800.1
length 1624
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC120556313
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13065952 ~ 13071332 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAACAATCAACCGAAGAAGAAGTCGTTGCCTTCCCAGTCAAGCTAAGGTCGTTGCAGCAGTTCGCCGCAGATATGATGTCTCTCGCTGCCCGGTCAGGGGCATTTTCCCCTTACATGCAGGCTACAGCTGTTGCTGTCGCTGGTCCCCTGAAAGCACTGGTACCCGGGGTTGTTGTAAAAGGAGAGAAGATTTTGTTGACCCCGAAAAAAACGTTCCTGTGCCGCGAATCGCTCAGCGGTCAAAGCCCAAAGACGGGGCCTGCTGTGACAGTTAGCATCAATGgctGTGCAGCGGTGCGTTATGCCCACACAGACGTGCGGGTGCCGGACTTCTCTGACTACAGGCGCCCCGAGGTGCTGGACCCCAGCAAGTCGTCCCAGGACAGCAGCGAGGGGAGGAGGACCTTCTCCTACCTGGTGACGGGCGCCACCACCGTGGTGGGTGTCTACGCCGCCAAGACGGTGGTCTCTCAGTTTGTGTCTTCCATGAGCGCGTCGGCGGACGTCCTGGCCCTGTCCAAGATCGAGATCAAGCTGAGCGACATCCCCGAAGGCAAGAACATGACCTTCAAGTGGAGAGGCAAGCCGCTGTTCGTGCGCCACCGCACGGAGAAGGAGATCGCCACGGAAGCAGGCGTCAACCTGGCGGAGCTGCGAGACCCGCAGCACGACAAGGAGCGCGTGCAGAACCCCAGCTGGGTCATCGTGCTGGGCGTGTGCACGCATCTGGGCTGTGTGCCGATCGCCAACGCTGGCGACTTTGGAGGCTACTACTGCCCGTGCCACGGCTCGCACTACGACGCCTCGGGCCGCATCAGGAAAGGCCCCGCTCCCCTCAACCTTGAGGTTCCCTACTACGAGTTTCCAGATGACAGCACGGTGGTTGTTGGATAGAGAACGTGATAAAACAGCAGGTGTTACAGTGTTCACGTGTCAGTGCTGCTGCCAGCTGCAGCGGGAAACTTTGTCTCAGCGCCACAAGCCTCTCTAACAGTCCTCTCTATCTACTGGAGTTCATGGAAGGTAATCTCTTTAACACAAGGACAGAAAAGCATTTGGAATGAATAGGTGAACACTTGGGCTGGGTaacgaattcaatacttttgaGACaacgaccgaattgcctcttaAAGTATCGAGTATGGAAAAATGCCTCGccattcaatacctaaggagtaaatcgcatcagtcagtgagccaatcagcacgcagcatgcttctaccaagatctaataatgtatGTGATTGGCTGTATAAcattacacgtcgtagagacacgcaggaaaaattCTACGTGACACAGAGACGGCTCACGTAGTCGGAGCTGGAACATGAGATTTGTGCTGTAATCTtgccatttctttttgtttcatgAAATTGTTCAGGAAGCGGtataaaagtcacagtattggtacTGGTACCGAAATGTTTTGAaggatacccagccctagtgaacACCAGGCAGAGTCCATCCTCTCTGGTTTCCTCATGTCAGAATATCACGTGAACATGACCTAAACACCTGCTTATCATATTAACTTATAGTCCATTTAACCAGCCCAGAACAAATGTTGTGTTCACGTCTGCTTAATAaagatttgtattttatttgaaaacGTGGA

Function

GO: NA

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36083 lncRNA upstream 41136 13024501 ~ 13024816 (+) True G27064
TU36046 lncRNA upstream 166765 12898975 ~ 12899187 (+) True G27028
TU36041 lncRNA upstream 195081 12870644 ~ 12870871 (+) True G27023
TU36034 lncRNA upstream 239318 12826392 ~ 12826634 (+) True G27016
TU36030 lncRNA upstream 263272 12802463 ~ 12802680 (+) True G27012
TU36101 lncRNA downstream 25499 13096831 ~ 13097130 (+) True G27081
TU36105 lncRNA downstream 37630 13108962 ~ 13109190 (+) True G27085
XR_005638794.1 lncRNA downstream 130085 13201417 ~ 13202220 (+) True LOC120556095
XR_005638824.1 lncRNA downstream 164081 13235413 ~ 13237052 (+) False LOC120556202
TU36156 lncRNA downstream 175368 13246700 ~ 13248009 (+) False G27129
XM_039794273.1 mRNA upstream 503399 12556047 ~ 12562553 (+) True LOC120555527
XM_039795938.1 mRNA upstream 1153230 11903272 ~ 11912722 (+) True lto1
XM_039794951.1 mRNA upstream 1928263 10934633 ~ 11137689 (+) False minar1
XM_039796119.1 mRNA downstream 18203 13089535 ~ 13091435 (+) True LOC120556474
XM_039795868.1 mRNA downstream 73175 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795869.1 mRNA downstream 89798 13161130 ~ 13176403 (+) False si:cabz01068815.1
XM_039795643.1 mRNA downstream 133507 13204839 ~ 13208335 (+) True kbtbd13
XM_039795202.1 mRNA downstream 180833 13252165 ~ 13271218 (+) True spg21
XR_005638880.1 other upstream 1034224 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 3205952 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 3461516 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 3910609 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 4305651 8753701 ~ 8760301 (+) True G26205
TU36106 other downstream 38425 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 163903 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 2370145 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 2403832 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 4653216 17724548 ~ 17742734 (+) True LOC120555788

Expression Profile