RNA id: XM_039795833.1


Basic Information

Item Value
RNA id XM_039795833.1
length 1519
RNA type mRNA
GC content 0.39
exon number 4
gene id c3h16orf87
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11574033 ~ 11599622 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCATGGAACTTGAATGCAACACACCAGCAGCAAGATTCCCCCTGCGCATGCTCACAACGTTAGCCTTAGTACTGAGATGTGTGTTTTTAGAAGGTGTGTTGTCATCCAGGCACTtcggtgtgtgttttttgcatgCATTTTTTAGTGTATTTGGAGCAAATCATTTTAAGAGACAGTTGTAGCTACCCTACAGCTGGAGGAAACGGACTATGTCggcaaataaaacaaagaaagtcAAAATGGCTACTAAATCTTGTCCTGAATGCGACCAACAGATTCCAGTTGCGTGCAAGTCCTGCCCATGTGGTTATGTGTTTATTAGCAGAAAACTCCTAAATGCCAAGTTAAATGAGCGCTCCTCTCCAGCCATAGCAGACAAGCTGGACTTTAAGCGGAGGAGGACAGAGCGCATTCGCAGAGAGAGGATAGACTCTTCTTTAACCAATGACTTGGAAAACAGGAGAAGATCCCGggcaaacagccaatcagatcccatCCGGAGAGGAAGGGGCAGACCAAAAACAGTGGGGCTGAAGAAACACGAAGAGGAGAAAGAGAAACAAGAGAAGGAAGTGGATATTTATGCCAGTCTTTCGGATGAGAAGGcctttgtgttttctgtggcCTTGGCTGAGATCAACCGCAAGATCCTGGGTCAAAGACTCATCTTATCATAGACCTGTCATAGAAAAACTATCAAATATCAAGAGGAAGACCAAAGAGGATGAAGAAGTGTCTGGAGCTGAACACTGATCTGGATGTGTTTCACCTGGATGATGGGATGAGATTGATAAACCTGGTGAAGCTTCAGAATGAGGTAGAGGGTGATGTTATTGAAAGACATCACAGCTCTTCAGCTCCTTGAATTAATCACCAACAatacacatgcaaacaaatATTTCTAGACCAAAAGCATGAGTgtggtttgtgttgtgttgtaatGACACACATTAGTATTGATGATTTTTCCCAACTGTAACAACATCCACACCATACTGTGCTATGAAGACCTCTTAGTTATGAGTTTATTTTTTGGAGAGTAGGAGACTAAGTAAATAATACATTCATCTGAAATAAATGGACTGTTATCAAGTGAACATCCTCAATTGATAGTAGCTTCACGTTAATGGAAGGGGCCAAGACATTTTGGTGGCTTTCTTATAACTGAAGATGAACAATGAAGATTCTTTTTTTGATTGCCATTGTTAATGATCTATTAGTAATGTTGAGCATGTAAAGCATCCTGGTAGAGTTAAAGCTTTCATTTCACttatgtgtccctgaacaagcTTCATTTTCCTTACAAGgtttaaaaacatacacaccatgTATTCAGTAGTTACTTTTATAGACTTTTATTGACCATGTCAAGTTGGCCTATTTAAGATGATTTCACTTTGCTTTGACTGCGTATGAAACTAAGTAACTTTCTAAATTGTAATCAGATTGTGAGTTAGTGCTGATGTAGTGaatatgttttcttttaaaataaaataaattatcaaTCTGTCCAACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35829 lncRNA downstream 1856 11571813 ~ 11572177 (-) True G26831
TU35800 lncRNA downstream 7408 11566262 ~ 11566625 (-) True G26806
TU35799 lncRNA downstream 8653 11564684 ~ 11565380 (-) True G26805
TU35798 lncRNA downstream 9482 11564222 ~ 11564551 (-) True G26804
TU35796 lncRNA downstream 14138 11559568 ~ 11559895 (-) True G26802
TU35858 lncRNA upstream 116791 11716405 ~ 11716708 (-) True G26857
TU35866 lncRNA upstream 170759 11770373 ~ 11770869 (-) True G26864
TU35919 lncRNA upstream 605461 12205075 ~ 12205324 (-) True G26912
XR_005638810.1 lncRNA upstream 667529 12267143 ~ 12267920 (-) True LOC120556136
TU35929 lncRNA upstream 679535 12279149 ~ 12279413 (-) True G26921
XM_039795128.1 mRNA downstream 63733 11476506 ~ 11510300 (-) False mtfmt
XM_039795126.1 mRNA downstream 63734 11476506 ~ 11510299 (-) False mtfmt
XM_039795127.1 mRNA downstream 63734 11476746 ~ 11510299 (-) False mtfmt
XM_039794619.1 mRNA downstream 110673 11391038 ~ 11463360 (-) False celf1
XM_039794533.1 mRNA upstream 7426 11607040 ~ 11636133 (-) True vps35
XM_039794534.1 mRNA upstream 43617 11643231 ~ 11649706 (-) False LOC120555651
XM_039793926.1 mRNA upstream 133827 11733441 ~ 11740920 (-) True fgf19
XM_039795496.1 mRNA upstream 181154 11780768 ~ 11784437 (-) True fgf4
XM_039795544.1 mRNA upstream 194666 11794280 ~ 11797219 (-) True fgf3
XR_005638773.1 other downstream 63734 11476764 ~ 11510299 (-) True mtfmt
TU35186 other downstream 2277287 9295068 ~ 9296746 (-) True G26298
TU35108 other downstream 2594957 8852787 ~ 8979076 (-) False LOC120555589
TU34939 other downstream 3427132 8144207 ~ 8146901 (-) True G26071
XR_005638761.1 other downstream 4229277 7332784 ~ 7344756 (-) False lmnl3
XR_005638741.1 other upstream 43617 11643231 ~ 11669155 (-) True LOC120555651
TU35842 other upstream 43957 11643571 ~ 11669269 (-) False LOC120555651
TU35894 other upstream 361087 11960701 ~ 11961772 (-) True G26891
TU35932 other upstream 704925 12304539 ~ 12304824 (-) True G26924
TU36095 other upstream 1470382 13069996 ~ 13095766 (-) True G27075

Expression Profile