RNA id: TCONS_00075193



Basic Information


Item Value
RNA id TCONS_00075193
length 1248
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id XLOC_037410
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45865267 ~ 45884134 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GGAATCGCCGGTTGTGGGAGATTACAGAGCAGAGATGCACGAAGATGTTAATGACTTCCTCATGTGAAGGCAGCGGGATAAAACATACAGTCCCTTCACACAGTTATCGCAGCCGCGGGGAATTGCGGTGTGAACCATCTGAAGGGGGGCAGAAATTAAACTTGCTCCGAGGGGGTGAATTCCCTCCCGTCCCGCTCCAGTTTTGATCTCTTAGAGCCCGGAAGGCGATAGGTCACCTGTGTAATTTGGACTAACACAACAGGCATAAATTGATGCAAAACACGGGATCAAACAGCAAGGTGCTGAAAATGATGGAGTGGCAAATATCTTTGTTTGTTATTGAGGACGCCAGCACCTGCAGTGATGGGTCAGTACACTCATTCGGGACCGGACTGCAGTCTCTCTCTCGGGTGGGCAGCGGATTTTAGACTAAACACGTTTCAAAACAAGTAAAAAGCACATCCGTCGGACACCGAGAGCGTCATTCCGTCTGCGTACTGACCAGAAACAGAGGAGGACAGAAGAGCTCGGTCCCATGCGTTTTCCAAAAGCCTCCTGCGTTCCTCCTTTGTGCAAATATGTTACAAGGACAGACAGGCATGCGGACGCACAAACCATGCAGAAAATCTACAGCTGTGAAGGAAATAGAATGAAAGAAACTTCACCCTGGCCTGCGAAATCAACAACAATCAGGCCAGACCTCGTGGCAAATTTAGCAGGAATGACAAAGAAaggtataaaaataaacaaacggaATCGAGtatacaaaacaaaagcaaaaaaagaataaaactaaTCCCAGATAGAGATGTCCCTTTGTTAAGACTTTGAGTCCGTAGGCTGCCGTTAGTTTTTTTGTGTATTATTGCAAAGTGGTTTGTGAGTGTTTCTTTTTGTGGTGGTCCGAGTGTGGATTGGTATTACGAGAGTCTTTGGGAATgtcgctttttttttctttctaacatCTCCACTTTCAAATCAATGTCGGTCCGCGCACTTCATTTTTGAAAGCAATTCAGATGAGAGTTAATGGATGTGATTTCGATCAAAAAATGCCCCCAAATAGATCATGCTCCAAGAGTAACAAGACACAAGATttcacaaaaagaaaagaaatggtcCCACAAAAACTGAGAGTGCTGACATCACTGTTAAAGCAAAGAAAACCAACACGATTGACACCGGGTCACATTTCAGCCCAAAATCGAAGATTGtttgtgaacaaaaaaaataaatgaataagattaa

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00074934 lncRNA upstream 311889 45548787 ~ 45553378 (+) False XLOC_037404
TCONS_00073593 lncRNA upstream 311889 45551068 ~ 45553378 (+) True XLOC_037404
TCONS_00074933 lncRNA upstream 603506 45261384 ~ 45261761 (+) True XLOC_037403
TCONS_00075192 lncRNA upstream 748426 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00075191 lncRNA upstream 820276 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00075195 lncRNA downstream 498718 46378709 ~ 46395404 (+) True XLOC_037411
TCONS_00075196 lncRNA downstream 535167 46415158 ~ 46431296 (+) False XLOC_037412
TCONS_00075197 lncRNA downstream 547601 46427592 ~ 46431296 (+) True XLOC_037412
TCONS_00075198 lncRNA downstream 602938 46482929 ~ 46525911 (+) False XLOC_037413
TCONS_00073603 lncRNA downstream 609855 46489846 ~ 46616033 (+) True XLOC_037413
TCONS_00073601 mRNA upstream 21788 45839260 ~ 45843479 (+) True XLOC_037409
TCONS_00073599 mRNA upstream 71073 45789887 ~ 45794194 (+) True XLOC_037407
TCONS_00073598 mRNA upstream 167623 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073595 mRNA upstream 197780 45605417 ~ 45667487 (+) False XLOC_037405
TCONS_00073597 mRNA upstream 198008 45605540 ~ 45667259 (+) False XLOC_037405
TCONS_00073604 mRNA downstream 764642 46644633 ~ 46684539 (+) True XLOC_037414
TCONS_00073605 mRNA downstream 865357 46745348 ~ 46799620 (+) True XLOC_037415
TCONS_00073606 mRNA downstream 2081491 47961482 ~ 47970760 (+) False XLOC_037418
TCONS_00073607 mRNA downstream 2081732 47961723 ~ 47967510 (+) False XLOC_037418
TCONS_00073608 mRNA downstream 2086176 47966167 ~ 47970760 (+) True XLOC_037418
TCONS_00073600 other upstream 43682 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 324674 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 531162 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 800998 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073585 other upstream 867844 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073602 other downstream 541036 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073638 other downstream 3905329 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 4209009 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 4920366 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 6202320 52082311 ~ 52082437 (+) True XLOC_037460

Expression Profile


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