RNA id: XM_039795876.1


Basic Information

Item Value
RNA id XM_039795876.1
length 3393
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120556335
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 44446183 ~ 44477267 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctTCTCTCGtctacaggcgaggcgcagttcatctcgaacgagcccaTTGCTATTCTATGACTAAGCACTGCTGTCAGGAAATAATCATAACTAAGCAGTAGCCTACTGCAGTTCTAACGTTACGTGTGGTTTGTTCAAGTGGTGCTGCCGTACCCCAGCAGAAGCTGTTGTACGACTGCTGTGGATACAACCTGTTGACAGCACATGTGATATTCAGAGCAGTGAGCAGACAGACGATAAGAcggagactctccacctggacatGGAtcacctgttgttgttgttgctgatgCTGCTGTGGAGCTCAGgACTCCAGGCAGAAGGAGAACACAATTCACCAgAGTCTGTCAGGTTGGTGGGAGGAGACAGTCGCTGTGCAGGAACACTGGAGGTGAAACATCACGGCGAATGGAGACCAGTTGATTACGATCTCTGGACCCTGAAGACAGCAGATGTTGTCTGCAGGAAGTTGGACTGTGGCTCTGTTGTTTCTgtaggaaagagaacagagtcCTCAGAGAACTTTACGCATGAGCATGAGTATGAGTATGAGTATGAGTACAAcaatcccttttttcaacaaaatCTCAAAGTCAAATCTGTGTGGAGGATCGACTCTGACTGTGTTCAGTCAGATCTGAGAGAGTGTGCAGAATCATCTTTCTCTTCCTACATCATGGATCTCACCTGCTCAGACTCTGTCAGGCTGGTGAATGGGACCAGTCTGTGCTCAGGCAGACTGGAGGTGAAGACTAGCCAGTCTACCCAGAAGTGGTCCTCAGTATGTGATGATGACTTTGACCAGCAGGATGCAGAGGTGGTCTGTAGGGAGCTTGGCTGTGGGGCTCCATCAGTCCTACAGGGGGTGCTCTATGGAGAAATGGAGGCTCCAATGAGGACCAAAGAGTTCCAGTGTGGAGGCAGCGAGTCTGCTCTCATGGACTGTAGAAGCTCAAGCTCAGATAGAAACACCTGCTCATCTGGAAAAGCTGTTGgactcacctgctcagAGCCTGCTGTTGTCAGGTTGGTGGGAGGAGACAGTCACTGTGCAGGATCACTGGAGCTGAAACATCACAGAGAATGGATCCGACTTAGTACTAAATCTGGCTGGACCCTGAAGACAGCAGCTGTGATCTGCAGAGAGTTGGGCTGTGGCTCTGCTCTTATTGTAGACGAGGGAGTTATTGAAGACGCACCTTTGTGGGGGATCAGCTCTGACTGTGTTCAGTCTGGATCTGCTCTGAGGGACTGTGCAACAGCACCTTCCTCTGACAAAATCCTGTATCTCACCTGCTCAGACTCTGTCAGGCTGGTGAATGGGACCAGTCTGTGCTCAGGCAGACTGGAGGTGAAGACTAGCCAGTCTACCCAGAAgtggtcctcagtgtgtgaagatGACTTTGACCAGCAGGATGCAGAGGTGGTCTGTAGGGAGCTCGGCTGTGGGGCTCCTTCAGTCCTCCAGGGGGCGCTCTATGGAGAAGTGAAGGCTCCAATAAGGGTCAAAGAGTTCCAGTGTGGAGGCAACGAGTCTGCTCTCATGGACTGTAGAAGCTCAAGCTCAGATAGAAACACCTGCTCATCTGGAAAAGCTGTTGgactcacctgctcagAGCCTGATGTCGTCAGGTTGGTGGGAGGAGACAATCGCTGCGCAGGAACACTGGAGCTGAAACCTCAGGCAGACTGGAGACCATTGGTTGGCTATAACTGGACCCTGAAGACAGCAGATGTTGCCTGCAGTGAGTTGGGCTGTGGCTCTGCTGTTTTTGTAGAACAGAGAGAAGATTCCTCATACAGATCTGTGTGGAGTGTCAACTCTGATTGTATACAGTCTGGATCTGCTCTGAGGGATTGTGCAACATCATATTTCTCCAAATCCACCCTGAATCTCACCTGTTCAGGCCTGCTGCTTCAGCCCAACATCTCTGTGTCCTTCTCCATGGACGGGGTCTCCGAGGCCCAGCAGCAGGGGTTCCGGGTGTTCAGGGGTTTCAACTTCACCATTAGCTGCTCCATCCAGCCACAGTACCCAGGAGGCTCCTTCCAGCTCACCTTCACCTCCTCCGACTCAGCACACAACTCCACCCAGCCAGCTGTCAATAACTctgcccacttcctgtttcctagAGTAGAGCCCGCCCACCAAGGAAGCTACAGCTGTGTTTATCACTTGTATGTTTTCTCTCATAACTTCTCCTCTGAGAGCCgtctgctctctctcactgtcatAGGTAAGCTGACCGTTTACAAGGTTGAAAAAGAGGATTTGTCCAAACTGAGTGAAAATAAAGAGCTgatgacatttcttttttttgtgattaacaatttttatttatttttaacacaacacACTGTTGGGAAATTGGAAGGTACAGATTCAGTTATAAACTGTCTTGTCCTGCATGCACGTAACCCTGTGCAACCTGACCAGCAGCTAAACACCTTCCACCATCAAGCTCTGGAGACTGCGATCGTCCTAACTCAGTTTATTTgacttagaaactggggaatGAAACACAGTGACCAGTTACTCACATACTGATGAGTCACAAACATTACACAATTTTAattgtaaaaacaatataactacACCTCACTGTAATGCGGtagtatatacagtaagtaACATGTAagctgaaaaaaaggaaatacataATGTATTGTTATACAGTGTACGTAATTTGACCTATATTGTTTATCTAAATAAACTAAAGTATACTTACATGTAGCACAACCCAAGATAATAGTGGCAAACTAGCTTATTGAAGCATACTGTCGGTCTAATGAGCTATCAATCATCAAAAATGTACATATTGCACATCAAACTTACTGACAATAATTAAAGATATAAGAACAGTATGTCAGCATCTATTTCACATACCGAGAATGCTACCAAAGGCATAGAACCCGcctataccatggtcacttgagAAATTACATTCTTTAAGACCATTAATTGATATTTTGTTGAGTGTTTTACAATTAAAATCCAAAGTTTATCAAACAATAACGTTTTCCTGGTAATACCTGAGGGTTTGACAAATACCTGGAACAATAATTTATATCCCTAAAGATTCTTCTGCAGTGCAGACGTCCACTGCTCTAGTAAATAGGACGGACCTTCGATACGACTTGCCACGCTTAGCAACGGTAGATATTTAAATATAATGTGACAGTATGTTAAACAACAAGACTATCTAGCTATCAGCCATGCCATTGTCCCCAAATCAATTAGTCAGACAGGCAGTGTTTCACAACCTTaataacgttttttttaaatcttgccCAGTTACTCTCTTGTTTAGATATAAACCTACGGTCAAATTAGCTACAaaagtagggtgaccagatttcccggaactaaaaccgggacactttgcgagtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45354 lncRNA downstream 39172 44409643 ~ 44409887 (-) True G34120
TU45340 lncRNA downstream 189497 44259359 ~ 44259562 (-) True G34107
TU45335 lncRNA downstream 234135 44211273 ~ 44214924 (-) True G34102
TU45322 lncRNA downstream 265919 44159330 ~ 44183140 (-) True G34089
TU45383 lncRNA upstream 6305 44483572 ~ 44483837 (-) True G34146
TU45385 lncRNA upstream 14304 44491571 ~ 44492098 (-) True G34148
TU45386 lncRNA upstream 14873 44492140 ~ 44492372 (-) True G34149
TU45400 lncRNA upstream 128335 44605602 ~ 44606004 (-) True G34163
TU45401 lncRNA upstream 144409 44621676 ~ 44622085 (-) True G34164
XM_039796167.1 mRNA downstream 394208 44053173 ~ 44054851 (-) True LOC120556524
XM_039795968.1 mRNA downstream 600160 43817732 ~ 43848899 (-) True si:ch211-71n6.4
XM_039796164.1 mRNA downstream 650996 43766691 ~ 43798063 (-) True LOC120556522
XM_039795483.1 mRNA downstream 692886 43709700 ~ 43756173 (-) True LOC120556093
XM_039794593.1 mRNA downstream 953241 43479602 ~ 43495818 (-) False LOC120555671
XM_039795598.1 mRNA upstream 56156 44533423 ~ 44650930 (-) True LOC120556176
XM_039795599.1 mRNA upstream 56156 44533423 ~ 44571355 (-) False LOC120556176
XM_039795281.1 mRNA upstream 201787 44679054 ~ 44683721 (-) True LOC120556004
XM_039795778.1 mRNA upstream 263907 44741174 ~ 44743918 (-) True il17a/f1
XM_039795614.1 mRNA upstream 339445 44816712 ~ 44826908 (-) True gtf2a2
TU45304 other downstream 359636 44085426 ~ 44089423 (-) True G34078
unassigned_transcript_148 other downstream 512011 43936976 ~ 43937048 (-) True trnav-uac
TU45172 other downstream 635834 43774610 ~ 43813225 (-) False LOC120556522
unassigned_transcript_147 other downstream 921406 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45036 other downstream 992212 43452712 ~ 43456847 (-) True G33914
TU45552 other upstream 314715 44791982 ~ 44915666 (-) False LOC120556527
TU45551 other upstream 410615 44887882 ~ 44890809 (-) False LOC120556527
TU45959 other upstream 661389 45138656 ~ 45180300 (-) False G34518
TU45966 other upstream 661389 45138656 ~ 45180300 (-) False G34518
TU45969 other upstream 661389 45138656 ~ 45180300 (-) False G34518

Expression Profile