RNA id: XM_039795900.1


Basic Information

Item Value
RNA id XM_039795900.1
length 1346
RNA type mRNA
GC content 0.49
exon number 8
gene id tspan4a
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15181720 ~ 15356059 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagggagagagagagagagagaaacagcgaGGGAGTCTGTGGAGAGGAACAacttgggaaggaacttttgTCATACACTGAGGAAAGAAGAGGGACAgccgggagagagagagagtagagagtGAGATAAGTGAGTGAACTGCGGCGCTGCAGGATGGCCGAGGGTTGCATGATGGCCCTGCGATATGGAATGGTCTTCTTCAACCTCCTTTTCTGGTTGGGAGGATGTGGCATACTGGGGGTGGGAGTCTGGCTCTCCGTGACCCAGGGAAACTTTGCCACCCTATCATCATCCCTTCCCTCCTTGTCGGCAGCCAACCTGCTCATCGCAGTGGGGACCATCATCATGGTGATCGGCTGTTTGGGCTGTGTGGGAGCTGTCAAAGAGAGCCGTCCTTTGCTGCTGACGttcttcatcctcctcttgctcATCTTCTGCCTGGAGATTCTGTCTATCATGCTTTTCTTCATCTACCAAGACGAGATCGATCACTACGCCCAGAGGGATCTGAAGAAGGGCCTCCAGCTCTTTGGCACAGAGGGAAACGTGGGTCTGACCAACGCCTGGATGATAGTACAAACTGATTTTCGCTGCTGTGGAGTAACCAACCACACAGACTGGTTCGAGGTTTACAATGCCACCCGTGTGCCAGACTCCTGCTGCCTGGAGTACAGCGACAACTGTGGCCTGGACAACCCAGGAACATGGTGGACAGCGCCGTGCTACGAGCGTGTAAAGGACTGGCTTAATGAGAACCTGGTGGCCCTTTGGATCTTTGCTCTATGCACAGCACTTACTCAGaTCCTGGGCCTGGTTTTCTCCATGACGATGTTCTGTCAGGCAGTGAAAGTAGAGACCTTTTACGCCTAGCCATCGTTCTCTCTGCCCTTCAGCACATTTGGATTGTTTCTCATCAGAGAGGGACGAATATAGACCcacccaccctcctcctcctcctcctcctcctcctcctcctcttcccgaCAGACTCTTCTTTCCTTGTCCTCTCTGTGACATTCCCTCTCAGATGTCACCAGTTCACAGTTTTTCTGCTAACTATCAACAAGCACAGTGTCAGTGTATTATCTGAGTTGAGTTGGTTCCTATGGTTTGCTCTGTGTCAAAATGCTAATTTCTGTGATACATTTTATGAAGCAGTATTATgaacatgtataaaaaaaaaaaaatgtaaccccTTTTTTTAATATGTGTTTTGTTCTAAATTATTTTATGGCTTGtatgtgttttaaaaatgagAGCTACAGTTGGGGACTATGTGAAGTGCTGCAAGTGCATGTCTCCTGCAATGATgtgtaataaatgtttttggctCGACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36611 lncRNA downstream 700 15180739 ~ 15181020 (-) True G27497
TU36605 lncRNA downstream 27605 15149500 ~ 15154115 (-) True G27493
TU36572 lncRNA downstream 127959 15050662 ~ 15053761 (-) False cfap70
TU36549 lncRNA downstream 164232 15016590 ~ 15017488 (-) True G27450
TU36539 lncRNA downstream 227829 14953538 ~ 14953891 (-) True G27441
TU36615 lncRNA upstream 5975 15362034 ~ 15374091 (-) True G27499
TU36613 lncRNA upstream 17436 15373495 ~ 15374091 (-) False G27499
TU36673 lncRNA upstream 88267 15444326 ~ 15446509 (-) True G27545
TU36688 lncRNA upstream 119194 15475253 ~ 15482686 (-) True G27551
TU36690 lncRNA upstream 123247 15479306 ~ 15505668 (-) True G27552
XM_039795748.1 mRNA downstream 102890 15053628 ~ 15078830 (-) False cfap70
XM_039795747.1 mRNA downstream 102890 15053628 ~ 15078830 (-) False cfap70
XM_039795746.1 mRNA downstream 102890 15053628 ~ 15078830 (-) True cfap70
XM_039795631.1 mRNA downstream 137838 15017564 ~ 15043882 (-) True LOC120556194
XM_039795177.1 mRNA upstream 62893 15418952 ~ 15427599 (-) True LOC120555953
XM_039795916.1 mRNA upstream 77363 15433422 ~ 15437488 (-) False LOC120556362
XM_039795918.1 mRNA upstream 77363 15433422 ~ 15436793 (-) False LOC120556362
XM_039795919.1 mRNA upstream 77364 15433423 ~ 15437488 (-) True LOC120556362
XM_039795988.1 mRNA upstream 168285 15524344 ~ 15532010 (-) True LOC120556400
TU36517 other downstream 337815 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 711375 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 1892456 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2085954 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 2876896 12304539 ~ 12304824 (-) True G26924
XR_005638870.1 other upstream 283710 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2152064 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2153891 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2154069 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2862063 18218122 ~ 18220550 (-) True G28121

Expression Profile