RNA id: XM_039795908.1


Basic Information

Item Value
RNA id XM_039795908.1
length 1945
RNA type mRNA
GC content 0.43
exon number 13
gene id cops2
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17695108 ~ 17702125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTGCTTCTTGGcatcctgacacacacacacacacacacacacaccaccaccaccacctcaccTTCGCTGCAAAACACAGCACAGGCCGGGCTACTGACTGTCCCTGAATACGAGCAAGGAAGACCATCAGGATGTCTGACATGGAGGACGATTTCATGTGCGACGATGAAGAAGATTACGACCTGGTATCTGAATACTCAGAGGACAGTAACTCGGAGCCAAATGTGGACCTGGAGAACCAGTACTACAACTCCAAAGCCTTGAAGGAGGATGATCCCAAAGCAGCACTCAGCAGTTTCCAGAAGGTATTGGAACtagaaggagagaaaggagaatGGGGATTCAAAGCACTAAAACAGATGATCAAAATCAACTTCAAGCTGACAAATTTTCCCGAGATGATGAACAGGTACAAACAGCTCCTTACATACATCAGAAGTGCTGTCACCAGGAACTACTCAGAGAAGTCCATCAACTCCATTCTGGACTATATCTCTACCTCCAAACAGATGGACTTACTACAGGAGTTCTACGAAACCACATTGGAGGCTTTGAAAGATGCAAAAAATGACAGACTGTGGTTTAAAACTAACACAAAGTTGGGGAAGCTGTACTTGGAGAGAGAAGAGTATGGGAAACTGCAAAAGATCCTTAGGCAACTTCACCAGTCATGTCAAACAGATGATGGAGAGGATGACCTGAAGAAAGGCACACAGCTGTTGGAGATCTATGCTCTGGAGATCCAGATGTACacagcacaaaaaaacaacaagaaactGAAAGCCCTGTATGAGCAGTCACTTCACATTAAATCTGCCATTCCTCACCCGCTCATAATGGGAGTTATTAGAGAGTGTGGTGGAAAGATGCATTTGAGAGAGGGTGAGTTTGAGAAAGCTCACACCGACTTCTTTGAGGCCTTTAAAAACTACGATGAGTCTGGCAGCCCAAGAAGGACGACATGCCTGAAGTACCTGGTCCTAGCCAACATGCTGATGAAGTCAGGAATAAACCCTTTTGACTCACAAGAGGCCAAACCATACAAAAATGACCCAGAGATCCTAGCAATGACAAACTTAGTAAGCGCCTACCAGAACAATGACATCACTGAATTTGAGAAAATCTTGAAAACAAATCACAGTAACATAATGGACGACCCCTTCATTAGAGAGCACATAGAGGAGCTCCTGCGGAACATTAGAACTCAAGTACTTATCAAACTCATCAAACCGTACACGAGAATACACATCCCTTTCATTTCTAAGGAGCTGAACATTGATGTGTGTGATGTGGAGAGTTTGCTGGTGCAGTGCATCTTGGATAAcACGATCCACGGCCGAATTGACCAAGTCAACCAGCTACTAGAACTGGACTACCAGAAGAGAGGAGGGGCTCGCTACACAGCTTTAGACAAATGGACAAATCAGCTGAACTCTCTCAACCAAGCCATTGTTAGCAAGCTCACATGATGGCATGTAAAATCAAGAGACAAGGAAAATGGCATGTTTGAATACATCCATAAAGTATGCTACTGTGCTTCTTCAAGTAAATCCTCCGAGACAAGATGCACAGCACAGGTTTTGAGAATGCCACCATATTCAGGAAGACGCCAGGAACTCAAAGAACGTGTTCaaagtgtgttgttttgtggtgATGAGAGGAAATCGCTGACacgtatttttgtttttcatgttccTGATTGGCAGATTCTTCCATGTGCAACACACAAATGCTtcagttgtttaaaaaaaaaaaaagaaaaaaaagaaagtccaAATGTGTATGAAAACGTGTACACAGTATTTTAATGTACACTGTTGCctgttggtaataaacatttctCTCAGCACTAAAAGGATTCAGCTGCCTTTGACTAGCTACAATGTTTGAACTCTGTGACTGGCGAGTAGGAGTcgaataaaatgtttttaactgtcataaa

Function

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12176 COPS2, CSN2, TRIP15; COP9 signalosome complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37112 lncRNA upstream 199335 17494748 ~ 17495773 (+) True G27895
TU37100 lncRNA upstream 229464 17381379 ~ 17465644 (+) True G27884
TU37095 lncRNA upstream 381018 17313888 ~ 17314090 (+) True G27879
TU37093 lncRNA upstream 400157 17292715 ~ 17294951 (+) True G27877
TU37037 lncRNA upstream 522637 17172255 ~ 17172471 (+) True G27840
TU37205 lncRNA downstream 36310 17738435 ~ 17743448 (+) False LOC120555788
TU37215 lncRNA downstream 123739 17825864 ~ 17826910 (+) True G27977
TU37336 lncRNA downstream 169621 17871746 ~ 17876173 (+) True G28066
TU37335 lncRNA downstream 186636 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA downstream 186725 17888850 ~ 17889217 (+) False G28065
XM_039795023.1 mRNA upstream 70576 17610313 ~ 17624532 (+) True LOC120555872
XM_039795021.1 mRNA upstream 70835 17609461 ~ 17624273 (+) False LOC120555872
XM_039795731.1 mRNA upstream 99947 17579325 ~ 17595161 (+) True slc30a4
XM_039795733.1 mRNA upstream 105798 17579316 ~ 17589310 (+) False slc30a4
XM_039795735.1 mRNA upstream 107459 17579317 ~ 17587649 (+) False slc30a4
XM_039794850.1 mRNA downstream 178 17702303 ~ 17720257 (+) True secisbp2l
XM_039794851.1 mRNA downstream 178 17702303 ~ 17720257 (+) False secisbp2l
XM_039794853.1 mRNA downstream 178 17702303 ~ 17720257 (+) False secisbp2l
XM_039794852.1 mRNA downstream 178 17702303 ~ 17719568 (+) False secisbp2l
XM_039794854.1 mRNA downstream 386 17702511 ~ 17719568 (+) False secisbp2l
TU36678 other upstream 2208687 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2248716 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4457289 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4584769 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 5663380 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 22423 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 859770 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1785121 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1795613 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1795968 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile