RNA id: TCONS_00075195


Basic Information

Item Value
RNA id TCONS_00075195
length 793
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_037411
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 46378709 ~ 46395404 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTTCCATATCCCAAATTGCTCACTACCCAAGGACTGCCAAAGGTGATCCATGATTTTACTCTGTCTCCATAACGAGAGAAGCAGAAGTCTGAAAATTCTTTGAATGCTTCCACAATGGAGTCATTAGTCCAGCCTCCTGATTCCTGTAGAGCTTGGGGAAGGTCCCAATGATGCAGGGTAACAGTGGGCTCGATTCCTGATTGCAGGAGTGTATTAATCATCTTATCATAATAAGCAGCCCCCTTTTCAACAAAACTTTCTTTGCGTCCAGTGGGAAAAATGCGAGCCCAAGAGATTGAGAACTGATAATTTGGTGCCATCATGCCTCTAAGAAGATACACATCATAGTCCACCTTGTGATAACTATCACAGCCCAAAATGGATTCGTTGACCCCGGCCTCATGGTTAAAACGGTCCCATATGGTTTCACCCTTCCCGTGTTCTGCTGATCCACCTTCGACTTTGAAACTCTCACTGGAGACGGACCATTGAAAATCAACTGGGAAGGAACCACTGAGGAACTGATCCCGCTCAGCTTCAGTCTGACTTTTGAATTTCTCCCAAACCTTCTGATATGAGAATGCAGAAGCTGATTTCTGATGAATTTTAGTGTTTTCCTTCTGCAGACTAAATGAAAACAATCATTTAACTGACTTAAAAACAGTTGCACAATGATacaatatgtatgtatgtttttcaCCTCAGTCTTACCTGAGTGTTTCTTCATAATCTAGCTCCTCAAAAACATATGTGATGTCACAGCCTATAATATGATGGCCTTCGTTCTGTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075194 lncRNA upstream 494575 45878659 ~ 45884134 (+) True XLOC_037410
TCONS_00075193 lncRNA upstream 498718 45865267 ~ 45879991 (+) False XLOC_037410
TCONS_00074935 lncRNA upstream 510642 45865391 ~ 45868067 (+) False XLOC_037410
TCONS_00074934 lncRNA upstream 825331 45548787 ~ 45553378 (+) False XLOC_037404
TCONS_00073593 lncRNA upstream 825331 45551068 ~ 45553378 (+) True XLOC_037404
TCONS_00075196 lncRNA downstream 19754 46415158 ~ 46431296 (+) False XLOC_037412
TCONS_00075197 lncRNA downstream 32188 46427592 ~ 46431296 (+) True XLOC_037412
TCONS_00075198 lncRNA downstream 87525 46482929 ~ 46525911 (+) False XLOC_037413
TCONS_00073603 lncRNA downstream 94442 46489846 ~ 46616033 (+) True XLOC_037413
TCONS_00075199 lncRNA downstream 443242 46838646 ~ 46840389 (+) True XLOC_037416
TCONS_00073601 mRNA upstream 535230 45839260 ~ 45843479 (+) True XLOC_037409
TCONS_00073599 mRNA upstream 584515 45789887 ~ 45794194 (+) True XLOC_037407
TCONS_00073598 mRNA upstream 681065 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073597 mRNA upstream 711450 45605540 ~ 45667259 (+) False XLOC_037405
TCONS_00073604 mRNA downstream 249229 46644633 ~ 46684539 (+) True XLOC_037414
TCONS_00073605 mRNA downstream 349944 46745348 ~ 46799620 (+) True XLOC_037415
TCONS_00073606 mRNA downstream 1566078 47961482 ~ 47970760 (+) False XLOC_037418
TCONS_00073607 mRNA downstream 1566319 47961723 ~ 47967510 (+) False XLOC_037418
TCONS_00073608 mRNA downstream 1570763 47966167 ~ 47970760 (+) True XLOC_037418
TCONS_00073600 other upstream 557124 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 838116 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 1044604 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 1314440 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073585 other upstream 1381286 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073602 other downstream 25623 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073638 other downstream 3389916 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 3693596 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 4404953 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 5686907 52082311 ~ 52082437 (+) True XLOC_037460