RNA id: XM_039795919.1


Basic Information

Item Value
RNA id XM_039795919.1
length 1516
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120556362
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15433422 ~ 15437488 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgcttgCCGGTCAGTGGTTGTTTCGGCTACATGCCGTTTGAATGGGAATGGTAAGCAAGTTAGCTGACTCGCTAGGAGGTAGCTAAGTATTTACGTCGCTATAATATATTTAGCTAAACAACTGAATGACGATACGCGGAATTGCAAATTTTTTTGACCGATGACATGCTATTTAAAGTCTAACCGACATTGCCATGACCTTATAATACACATCTGTCTAAAGAGGCAGGAATCAGTCTGATGAGGGGTCACCTAAAGCTGGCAGGATGCAGCAGAAAAGGAACATCCAGATCATCGAGTGGGAGGACCTTGACAAAAGGAAGTTCTACTCTTTCGGGGTGTTCATGACGATGACCATCCGGGCCACGGTCTACCCGGCCACACTCATTCGCACTCGGCTGCAGGTGCAGAGGGGCAAATCGCTCTACAGCGGCACCTTTGACGCCTTCTTCAAGATTCTGCGGACGGAGGGCGTTCGAGGCCTTTATCGCGGCTTTATGGTCAACACCCTCACACTCATCTCAGGCCAGGCTTACATAACCACCTACGAGCTGGTGAGGAAGTATGTCTCCCAGTATTCTGAGGACAATACGGTCAAGTCACTGGTGGCGGGCGGCATGGCCTCCCTGGTTGCTCAGAGCATCACTGTTCCTATAGATGTTATCTCTCAGCAGCTAATGATGCAGGGCCAAGGGGAGCACCTCACCCGCTTTAGACTCAATTCGAACACAGAGACTGGAAAGCCCAAAAAAGTGTTCGGCCAAACCAGAAACATTATGGGTCAGATTTTTGCTGCTGATGGTTTCCGGGGCTTCTACAGGGGATATGTGGCTTCTTTACTCACATATATCCCAAACAGTGCTGTCTGGTGgcctttttatcatttttatgcTGAGCAACTTTCTCAACTGGCACCCAGTGACTGCCCTCATCTGATTCTACAAGCCATGGCTGGACCTCTAGCTGCCGCTACTGCCTCAACTGTCACCAACCCAATGGATGTGGTCCGAGCCAGAGTGCAGGTTGAAGGGAGGTCTTCAGTCATCGAGACGTTCAGGCAGCTCATCAAAGAGGAGGGCGGCTGGGGATTGACCAAAGGACTGTCGGCACGCATCATCTCATCCACGCCCACTGCCCTCGTCATGGTGGTCGGCTACGAGACGCTAAAAAAACTGAGTTTGCGACCGGAGCTGGTGGACTCGAGACACTGGTAGAAGATACCCGGACAGACAATATACGGACCAcgtgccatttttttttttcctacgttCGATATTCTGTGAAAACACTGGATGAAAGAaaagtttgttttaaataacaACGTGggaaacttgaaaaaaaattcaatcAAGCCACTTCAAACACGCATTACCATGTGTATAAGACAATGACCATGTGTCCATGCCAACATATTAGTTGcagattaaaggtgctctaagcgatgttgggcgACGGCCCTTCTccgttgacgttcaaagtattttcaaacaaaacggaggctagctcgcccctccct

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15121 SLC25A44; solute carrier family 25, member 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36615 lncRNA downstream 59332 15362034 ~ 15374091 (-) True G27499
TU36613 lncRNA downstream 59332 15373495 ~ 15374091 (-) False G27499
TU36611 lncRNA downstream 252403 15180739 ~ 15181020 (-) True G27497
TU36605 lncRNA downstream 279308 15149500 ~ 15154115 (-) True G27493
TU36572 lncRNA downstream 379662 15050662 ~ 15053761 (-) False cfap70
TU36673 lncRNA upstream 6838 15444326 ~ 15446509 (-) True G27545
TU36688 lncRNA upstream 37765 15475253 ~ 15482686 (-) True G27551
TU36690 lncRNA upstream 41818 15479306 ~ 15505668 (-) True G27552
TU36692 lncRNA upstream 45622 15483110 ~ 15486465 (-) True G27554
TU36724 lncRNA upstream 96512 15534000 ~ 15535337 (-) True G27582
XM_039795177.1 mRNA downstream 5824 15418952 ~ 15427599 (-) True LOC120555953
XM_039795901.1 mRNA downstream 77364 15181720 ~ 15356059 (-) False tspan4a
XM_039795988.1 mRNA upstream 86856 15524344 ~ 15532010 (-) True LOC120556400
XM_039795399.1 mRNA upstream 99486 15536974 ~ 15578092 (-) False csnk1g1
XM_039795398.1 mRNA upstream 99486 15536974 ~ 15578092 (-) False csnk1g1
XM_039795397.1 mRNA upstream 99486 15536974 ~ 15578092 (-) False csnk1g1
XM_039795395.1 mRNA upstream 99486 15536974 ~ 15578092 (-) False csnk1g1
TU36517 other downstream 589518 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 963078 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2144159 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2337657 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 3128599 12304539 ~ 12304824 (-) True G26924
XR_005638870.1 other upstream 202281 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2070635 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2072462 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2072640 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2780634 18218122 ~ 18220550 (-) True G28121

Expression Profile