RNA id: XM_039795934.1


Basic Information

Item Value
RNA id XM_039795934.1
length 1688
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC120556376
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40598769 ~ 40631125 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaagaggccAACATAAGCCACAGAGGCACAtgaaaaagaagaacaagagAGCAGCTGTAGGGAACATCTGACCATCCAGGACCAGACCCGAGGTCAGATCCAGGACCAGAGGCTGCACGAAGACCAGAATCCGGACCCAGACCAGGAGCAACCCAGTCCACCATGTCAGAGCCCATCAGAAGAAAAAGCTCCAGCAAGCAGCTCCTGCAGAACCTCATCAGTTTGACAGCTCAGCGGAGCCAGgaggatgctgaggaggtggaGCGGGAGCGAAGGAGGAGAGCCAGGGAGAcgcagagaggagaggggagtcCCTCATGGCCGGAGCCCCCCCAACACAACCAGCTCACACACCGCAACACAGAGTTGGACGAGGAGCTGAAGCCCAGATGTTGCATGGTTCTGGAGGAGGACGAGGGCTTCAGCGACTGGAGTCACAGGTTGGAGGGTCGTAATGAGCAGGATGTGCAGGATGACTGCAGGGCCAAAGTGCAGAGGCCTTCAACAAGACAGTGGAAACCAGAGCCTGGACAGGAGAAACAGCAGCAGAGTGAAGAGGACGAGAAGGGATGTGAGCCAGAACGAAGCAGTCGGTCACAGGAAGCTTTAACAAGACCTCCAGAGAAGATGTCCAGCAACAGATACAGCTCAACAGTCTTCCTGTCACAGGACGCCAGGCTGCAGCACGCCATGGGCCAACCAGCAGACAGGACGTCCTACCTGGTGGCCGGGACGATGAGGCCACGCGGAGGGGCACGCAGGGTGGATGGGGAGGTggagcagcaggagcagaagGAGGATGTAAAAGAGATGCAGGCTACTCTGCAGAGGGAGTGGACTTCAGCAGAAAGCCGACAGAGCCCCGGAGATGAAGATGACCAGGAGGAAGAAGAACTGAGCTTCACAAATGAAGAGAAGGATGACCTCCACctcaggagggaggaggaaggggaggagggggagcagCACAAGATGCCACACAAGAGCTCAATGGAGGGAAGGAGGAGTGAGGAGGTGAGCAGAAGATCTGCAGCCCCTCGTTGCAGCAGCAGCGAAGGCGAGGAGCTGTTAAACTACGGTCCCATGAGCCCGACATTCAAGAAACTCCTCATTCAGTTTTACCCAGATGAAGTGAACAGCAGAGTCTCAACAGACGGTAAATGCACGATCATAGAGAGAACCGAGTCTCTGAGGAaaagCACCAGCAACATAAAGAAGACGCTGCCACCTGTTGCTGTTTCCAAGATTGACAAGAAACTGGAGCAGTACACACATGCTCTTGAGGTCTCCTCAAAGGAAGGCAGATCAGCCAGTCAGCTGCTGCCAGACCTGATGAGTCCCACTGAAGCTGTCTCCTCCAAGAAGAGCCTGTTTGAGGCCGGAGAAGCCTGGAACCAAAACGCAATCTCAGTCACACCATCTAAGGATGCAGATGGTTTAAAAGTCGGTGTGGCTGATCTTATCAATCAGTGGGTGAAAGGAAGTGAAGATGGTAGCAGGTGCAGCTCGCCCTCCAGACCAGCAGTGAGTCCAATTTTTACCCTGAATGAACCAGGAttgtcttctcttcttcttctctttgcaTCATGATCTTGCAGTGTTGGACACAAAACCGGTTGGTGTTTCAAACAAGAAGTATTTATGGGAGAACCTCGGTGACACATTATCTTctggaagggaagggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43959 lncRNA downstream 20904 40564244 ~ 40589664 (-) True LOC120556146
TU43948 lncRNA downstream 46637 40562192 ~ 40563931 (-) True G33109
TU43892 lncRNA downstream 215865 40281473 ~ 40394703 (-) True G33061
TU43971 lncRNA upstream 30333 40661458 ~ 40662555 (-) False LOC120556513
TU44032 lncRNA upstream 287102 40918227 ~ 40918584 (-) True G33167
TU44033 lncRNA upstream 289209 40920334 ~ 40925054 (-) True G33168
TU44071 lncRNA upstream 305716 40936841 ~ 40937064 (-) True G33196
TU44277 lncRNA upstream 814404 41445529 ~ 41445742 (-) True G33347
XM_039795545.1 mRNA downstream 21001 40564241 ~ 40589567 (-) False LOC120556146
XM_039795546.1 mRNA downstream 21001 40564241 ~ 40589567 (-) False LOC120556146
XM_039795550.1 mRNA downstream 21002 40564241 ~ 40589566 (-) False LOC120556146
XM_039795549.1 mRNA downstream 21002 40564241 ~ 40589566 (-) False LOC120556146
XM_039795553.1 mRNA downstream 21003 40564241 ~ 40589565 (-) False LOC120556146
XM_039795536.1 mRNA upstream 17222 40648347 ~ 40652751 (-) True LOC120556133
XM_039796158.1 mRNA upstream 30239 40661364 ~ 40663657 (-) True LOC120556513
XM_039794190.1 mRNA upstream 35147 40666272 ~ 40671602 (-) False foxr1
XM_039794189.1 mRNA upstream 35147 40666272 ~ 40671599 (-) True foxr1
XM_039795758.1 mRNA upstream 41790 40672915 ~ 40682357 (-) True LOC120556279
TU42453 other downstream 6011027 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 6794198 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 6794198 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 7161507 33438463 ~ 33449061 (-) False znf710b
TU42136 other downstream 7262478 33342247 ~ 33348090 (-) True wdr76
TU43972 other upstream 17551 40648676 ~ 40662621 (-) True G33122
TU44387 other upstream 1126666 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 1768166 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 2354098 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 2583509 43214634 ~ 43214987 (-) True G33847

Expression Profile