RNA id: TCONS_00075197


Basic Information

Item Value
RNA id TCONS_00075197
length 2780
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_037412
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 46415158 ~ 46431296 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cccaggGGTAcacgaagatattttgaagaaccgTTTGTGAGAAGAACAAGCCAAAATGTCCACTGACATACATGCTGAGCTAATGGAAAAAAtaccgtccacatggaggtaagctgGTAAGTGCTAAACAGTGTCATGCCACCCCATagcgtttattttaaatattaaatgcagCCAAAACTACTTCTGCCTACAtaattccagaaatgtatatagggctacttttcagaatgagattGTGTTGAggtaacccacgcgaacacaggaagaacattcaatctccacacagaaatgccaactgacccagccgggtctcgaaccagtgagcttcttgctgtgaggtgacagtgctaaccactgagccaccgtgccaccctattacaagaaatgtatgtattttttagaTTGGCTATAGACTAAACCACTGTTATCCTATGACTTAAGGCCTAATTatccttacctgcctagttaagcctttaagccgttaaattgcactttaagctcaataatagtatcttgcaaaataacaaagtcaaatataatatactgtaatcatggaaaagaaaaaaataaggttattagaaataagttaataaaactgttgtttaaaaatgtaaattttctctccattaaacagaacttgggaaatattttaaaataggaatGTAAATTCAACAGGAGGACGATTTAGTCAACTGTGagagtgatatttatttatttgatgttgcTTTATAGTGTATTTCTCTCTTTGGAGAAGTCGAGTTGTGGTCATTGAGCTGCCCTGTTTTGTTTttgccaattaaaaaaaatatatattgtaaataaggTGAGTAAATAACTTAACTTGAAGTTAAACATACCTTTAACATAACAAAAGAGTGTCAACATACTCATTAAGCTCTAAAACGAAGACCGTTGGCCAGGCAAATGATATGTTGTCTGTCTGGCGGGGATTTTCAACATGAATGCTTAGCCATTTGGGGGTTGGGGTACAAACCAGTGGATGGGGGTTGGGCTGTTTCACCCTTGTGTTAGAGATGACCCGTGGGGGTGGTGGTGGTGAATCTCCTATTTCAATAAAGTTAAAGAGTGGATAGTGTAGTTTGACAACTACTTGTCGGCTACGAGGTGAGAAATACAGGATTTGAAACCCCCAGCCTCTTTAAGTAAAAGGGTGGCGCATTACCATAGAAACAGACAGATCTGGCCTCAAACTCCCCCGACCTATTGTAACAGATGGTTGGAGGTAGAGCTCTTTGGGGGGTGGGTTAAACCAGCAATTTTGTAAAGATCCTCATTAAAAGTTTCCTTCCTGTATAGTTCTAGTGTTACTGACTCTGTTACCTGAAAACACTATTAATAATGAGAATAAGAAAGTATGTTTCAAAATAACAACAATtggtaaacataatttaatatacaGCACTGTGCAAAAGTTTTAGGCCAACTTTAAATCTTATGTTTTACTGATGGTATAATGGATATGTGACCCTtttaccacaaaaccagtcataagtgtaaattaatattattttttattaattgagaTTCATACAGAAAGAATAAATTATCTTTCAGTTGATGTATGTTAGGATATAAGTTAGGTTAGATTAGAGTATGCATTATTTAGGTTTAACTGTTTAAGACAAATGAAAGACAATGTTGGAGAGAGGCTGTATGTTCTGGTTTATAATAACCTTATtttaaccaggtaagtcaattgaGAACCAGGTCTCTTTTACAATGATGACCTGGCCAAGAAGCAGCATAAAACGCAGATATAAAGAAGCAGgaacacaatacaataacaatttcacaaatgcagataataacatataaaaccaaGGTAAAAGTAAAAACCAGCACAGTAATTGTGTACTGGTAACTGTATTGAATTTTTAAAGGATGACAGTGGAATGAAAGTGTTGAGCTTTAAAGTCTGCTGCAGATGATTCcatcagcagcagaaaactgaaaagagtaGCGACCGAATGAAGTGCGAACTTCGGGTATACAAAGGTTAATAAAACTACTAGATCACAGATTTCAAGATGTTTTCTGAGTCTTAAGAAGTGACTGTAAATATAGTGGAGTTTTCCCAATAAGAGTTTTGTAAATGAACAAAAACCAATGAATTTGTCAACGTGGCATAATGATTTGAGCTGCATTTCTACCAGTGTTGTTAGCAATATTGTCTGAATTAATGGAAGTGTGAATGTTGAAAAGTACAGATTTTCAGGTTAATGTTTTTAATCCATTAAGCCATTTCTTCTAGAAAGGACTTCAGTGATAATAGTTGTCATTTTCCGCACGATAATGATCTTCTAATTGCAGTGAAATCCTATCTGGTGAATGAAAACAGCTGCTGAAACACAGACAGTCATGTAATGtcctccacagagtccagacctgaatattatagatGCTGTTTGAGATCACctggacagaaaaagaaagatacGACAACCTAAACCTAAAGAAGCACTCGGGGAAGTGCTAAAAGAAGCCTGATAATacacattatttcagaaaatgaaaGGACGATAAGAACAAAACAGTTTAGTTGTGCGTGGTACCAAGGAAAGAGACATTAAACATAGACTTTTTCTTAAAGAGGAAATGtgctgctgttgtttttttgtacatatttcctatgtgttctgtttgttttttatattgattGATTAAAATTGATTGATTATACAGGGCTCAACGGTATGGACTGCCCAATGACCCGGGGCCAACGTGAGTTCGGGACAGTAGAGAGCAtcgttatgccg

Function

GO:

id name namespace
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0043049 otic placode formation biological_process
GO:0072175 epithelial tube formation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0035148 tube formation biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0030916 otic vesicle formation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075195 lncRNA upstream 32188 46378709 ~ 46395404 (+) True XLOC_037411
TCONS_00075194 lncRNA upstream 543458 45878659 ~ 45884134 (+) True XLOC_037410
TCONS_00075193 lncRNA upstream 547601 45865267 ~ 45879991 (+) False XLOC_037410
TCONS_00074935 lncRNA upstream 559525 45865391 ~ 45868067 (+) False XLOC_037410
TCONS_00073593 lncRNA upstream 874214 45551068 ~ 45553378 (+) True XLOC_037404
TCONS_00075198 lncRNA downstream 51633 46482929 ~ 46525911 (+) False XLOC_037413
TCONS_00073603 lncRNA downstream 58550 46489846 ~ 46616033 (+) True XLOC_037413
TCONS_00075199 lncRNA downstream 407350 46838646 ~ 46840389 (+) True XLOC_037416
TCONS_00075200 lncRNA downstream 423249 46854545 ~ 47316207 (+) False XLOC_037417
TCONS_00075201 lncRNA downstream 561274 46992570 ~ 47316207 (+) False XLOC_037417
TCONS_00073601 mRNA upstream 584113 45839260 ~ 45843479 (+) True XLOC_037409
TCONS_00073599 mRNA upstream 633398 45789887 ~ 45794194 (+) True XLOC_037407
TCONS_00073598 mRNA upstream 729948 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073597 mRNA upstream 760333 45605540 ~ 45667259 (+) False XLOC_037405
TCONS_00073604 mRNA downstream 213337 46644633 ~ 46684539 (+) True XLOC_037414
TCONS_00073605 mRNA downstream 314052 46745348 ~ 46799620 (+) True XLOC_037415
TCONS_00073606 mRNA downstream 1530186 47961482 ~ 47970760 (+) False XLOC_037418
TCONS_00073607 mRNA downstream 1530427 47961723 ~ 47967510 (+) False XLOC_037418
TCONS_00073608 mRNA downstream 1534871 47966167 ~ 47970760 (+) True XLOC_037418
TCONS_00073600 other upstream 606007 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 886999 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 1093487 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 1363323 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073585 other upstream 1430169 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073638 other downstream 3354024 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 3657704 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 4369061 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 5651015 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 8816904 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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