RNA id: XM_039795958.1


Basic Information

Item Value
RNA id XM_039795958.1
length 2981
RNA type mRNA
GC content 0.52
exon number 21
gene id nadsyn1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6598675 ~ 6630288 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtagtaGAGGCGGAGTACAGGCGTTCTGTACTTCTCCAGATCAGGTTGAGGTAACTCCACATAGTCCTAATGACAGCCAGTTCAGGTTAGATAGATAACTATAGCTACAGTATTTAGCTACACCTGTGCTAGCTTACCGTTATATCCCATATCATTTGCATTGTCCGCCTGGTTTGTTCACGCGACGTGAGTTGCTCAGTGTTGTAACTTAGCAACTACCGAGGACATGGGACGGAAAGTGACCCTCGCTACGTGCTCGTTGAATCAGTGGGCTTTGGACTTTGAAGGCAACCTGGAGAGAATACTGAAGAGTATTGAGATTGCTAAAGCTCACGGAGCCAAATACAGACTGGGCCCGGAGCTAGAGATATGCGGTTTTGGCTGTGCAGACCACTTCTATGAGTCGGACACGTTGCTACACAGCTTCCAGGTCCTGAGGAAGCTTCTAGAATCGGCTGTCACCCAGGACATCATCTGTGACGTGGGCATGCCCATCATGCATCACAATGTGCGCTACAACTGTCGGGTCCTGTTCCTCAACAGAAAGATTCTGCTGATCAGACCTAAAATGGTGATGGCCAACCATGGCAACTACCGAGAGCTGCGCTGGTTCTCACCGTGGAACCAGTTAAGGAATGTTGAGGAGTATTTCCTGCCAAGAATGATCCAGGAGGTAACAGGGCAgGTTACTGTCCCATTCGGTGACTGCGTGCTGTCCACTAAGGACACCTGCATTGGCACTGAGATTTGCGAGGAGCTCTGGAACCCCAGAAGCCCCCACATTCAGATGGGTCTGGATGGAGTCGAAATCTTTACCAATTCGTCCGCCAGCCACCACGAGCTCCGCAAAGCAGACCAAAGAGTCAACCTGATCAAGTCAGCCACCACCAAGAGTGGAGGCATCTACCTGTATGCCAACCAGAGGGGCTGTGACGGGGACCGCGTGTACTACGATGGGTGCGCCATGGTGGTCATCAACGGAGACATTGTGGCACAGGGAGCGCAGTTCTCACTGAATGATGTGGAGGTGATTACAGCCACTCTTGACCTGGAAGATGTGCGGAGTTACAGAGGAGAAGTGTGCCAGCCGAACATGGAGCGTGAACCCAAACCTTGCCACAGGGTCAAAGTTGACTTCTCTTTCTCCAGTGGGGATGATATCTTCCTCCCTACCCACCAGCCAATAACATGGCACTTTCATACCCCAGAGGAAGAGATCAGTCTAGGGCCAGCCTGCTGGCTGTGGGACTACCTGAGGAGAAGTGGACAGgctGGTTTCCTGTTGCCTCTGAGTGGAGGTGTGGACAGCTCGTCCACCGCCTGTATCGTCCACTCCATGTGTGTGCTGCTCTGCCAGGCCGTAGAGGACGGCAACGGCCAGGTGCTGGAGGATGTtcgcagggtggtaggggatgACTCCTACCGTCCGCAGCACCCGGGGGAGCTGTGCGCTCGCATCTTCACCACCTGCTACATGGCCAGCGAGAACTCCTCAGAGGACACATGCAGCAGGGCCAGAGAGCTGGCCAATCAGATCGGCAGCACACACATGAATATTAACATAGATATGGCAGTGAAAGGCATTCTGGGTATCTTCTCAATGGTTACTGGAAGGTGGCCTCAGTTTCGCGCCAATGGAGGAAGCCACAGAGAAAACCTGGCTCTGCAGAATGTGCAGgctCGGGTCAGGATGGTCCTGGCCTACCTGTTTGCCCAGCTGAGTCTGTGGGCGCGGGGGAAGCCCGGTGGATTGCTGGTGCTTGGCTCAGCCAACGTAGATGAGAGCCTGACAGGGTATTTCACAAAGTACGACTGCTCCAGCGCTGACATCAACCCAATAGGAGGCATCAGCAAGGCAGACCTGAAGAGCTTCCTGCTCTACTGTGTGGAGCAGTTTCAGCTCCCCGCTCTGACAGGCATCCTGTCCGCACCGCCCACAGCTGAACTGGAGCCACTGACAGACGGACATGTGTCGCAAACAGACGAGGCAGACATGGGGATGACCTACTCTGAGTTATCTGTGATTGGACGACTGAGGAAGATCTCCAAGTGCGGCCCCTTCAGTATGTTCTGTAAACTCATTCACATGTGGAAGGATGCGCTCTCACCCACAGAGGTTGCCCAGAAGGTGAAGCACTTCTTCCGCATGTACTCCATGAACCGCCACAAGATGACCACGGTGACGCCATCCTACCACGCCGAGAGCTACAGCCCCGATGACAACCGCTTTGACCTCCGACCTTTCCTCTATAACACTCGCTGGACCTGGCAGTTCAGGTGCATCGACCAGGTGTCCCAGGAGACGGCAAACACCCCACGGCAATAGGAACCTGAGGTCTTCAGTGTCCTGTCATTACCCATCCCAACTGTGAGATCAGAAAGATCATATATTATTTGGTGATTTTGTGTAGCTTTCATTCAAGCCAAATACGTTGTACTGTGTTTGCAAGCGCAGGGCCAAGCAGGGGACAGAATCACTTTGCTGGGACTATATAGAACCTTTGTTCTACCcggtggtggaatgtaacattTACTTAAGTGCTGCATAAGTACATATTTGAGGTACTTATACTTatataagtgttttttttttgctactttatacttttactccgctACGTTTGTCTGAcggctttagttacttttcagtttttccccccaccttcctgtccagtgaaggccatgttgaatgtttgtgaaaaAGTCAGATGAatgtgctgttgtttttttttgctgacacaatggaaagttttaaaactttttaaaaagacgtggttctcacaggacggCGACACTACAAACACTAAgagccctatcttgcacccggcgcagcgcggCGCACGGCCCGACACAACACCCGACGCaaatgtctttgctagtttaagaccgacgcagttgtcaatttcccgtccagcgcccacgtcgtttaaatagcaaatgcacctgcgcccatctttgcgcccatgggcgtgctggtctt

Function

GO: NA

KEGG:

id description
K01950 E6.3.5.1, NADSYN1, QNS1, nadE; NAD+ synthase (glutamine-hydrolysing)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34670 lncRNA downstream 1884 6596268 ~ 6596791 (-) True G25837
TU34663 lncRNA downstream 55509 6543090 ~ 6543166 (-) False tpcn2
TU34661 lncRNA downstream 66781 6530167 ~ 6531894 (-) True G25828
TU34654 lncRNA downstream 74340 6509288 ~ 6524335 (-) False pop4
TU34625 lncRNA downstream 192078 6406388 ~ 6406597 (-) True G25795
TU34685 lncRNA upstream 5960 6636248 ~ 6638362 (-) True G25848
TU34688 lncRNA upstream 11382 6641670 ~ 6641986 (-) True G25851
TU34713 lncRNA upstream 69144 6699432 ~ 6739014 (-) False G25874
TU34714 lncRNA upstream 76289 6706577 ~ 6739014 (-) True G25874
TU34715 lncRNA upstream 158054 6788342 ~ 6788627 (-) True G25875
XM_039795655.1 mRNA downstream 8036 6534042 ~ 6590639 (-) True tpcn2
XM_039795883.1 mRNA downstream 74320 6509259 ~ 6524355 (-) True pop4
XM_039794172.1 mRNA downstream 89981 6506363 ~ 6508694 (-) True LOC120555473
XM_039795895.1 mRNA downstream 116665 6454631 ~ 6482010 (-) True pcsk6
XM_039795605.1 mRNA downstream 219597 6347189 ~ 6379078 (-) True plekho2
XM_039795937.1 mRNA upstream 11876 6642164 ~ 6693331 (-) True dok4
XM_039795656.1 mRNA upstream 217191 6847479 ~ 6901349 (-) True ccdc102a
XM_039795920.1 mRNA upstream 339990 6970278 ~ 6982361 (-) True LOC120556364
XM_039795923.1 mRNA upstream 375554 7005842 ~ 7023172 (-) False LOC120556367
XM_039795922.1 mRNA upstream 375554 7005842 ~ 7023172 (-) True LOC120556367
XR_005638726.1 other downstream 431146 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 4321584 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 4322666 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 4765281 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638786.1 other downstream 4956327 1588886 ~ 1642348 (-) False LOC120556047
TU34701 other upstream 12158 6642446 ~ 6644606 (-) False dok4
XR_005638761.1 other upstream 702496 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 1513919 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 2222499 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 2664780 9295068 ~ 9296746 (-) True G26298

Expression Profile