RNA id: TCONS_00075198


Basic Information

Item Value
RNA id TCONS_00075198
length 707
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id XLOC_037413
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 46482929 ~ 46616033 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGCTTGGAAGTGAAGTAGTGGATCGAATGATATGGAGGAACCAGAGGAAGGATGAATGGAACCAGGTTCATGGAAGGAGTGGGAGACAGAGGCAACAGATGAGCATCACACTAGGAAGTAGGGAGATAAGGAACACTGGAGATAACAGGTAAACAGGACAGGAAGGTGGCATGATACCATTTGAGGTTCAGTGCATGGCATCAGATGGAATATCCCTGATGTACAGCACCATCTAGCGGCTGAAGTGAGCATCACTCtctgatgagagagagagagagagagagagagtctgtcAGAAGGGGGAGAAACCGAGCAGCTTGAGCGCTTCACTATGGACCAGTACGGCTGGTGCGCTCTCTGACCGATCGCCTTCACCTTATTTTGCCTGGAAAACTCTCCAAACACACAGGTTATGCCACCCCACAGGCTGACTGGAAACCCAGCCGTGAAAGAGAAGGGCTGATTACAGACCCCTAGTGTACCCGCAGCTGCGCCCGTCCCTGTCCCCATGGCGACAGGAGGTCATGCCCCCGAGACAGATGTGTTGATCAACCTGCATCAGGTGAGAGATGCCAAAAACCCTCTCTGTTATTTCCAGGATCTGTGTGTTTTGagctgtatttttcttttgtgtgGTACCGCTCGACTCAGCAGGATTTTGGCTACGTTTTTAGCTTTTCCACTTTAGCTTAGCAACACTTCAA

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075196 lncRNA upstream 51633 46415158 ~ 46431296 (+) False XLOC_037412
TCONS_00075197 lncRNA upstream 51633 46427592 ~ 46431296 (+) True XLOC_037412
TCONS_00075195 lncRNA upstream 87525 46378709 ~ 46395404 (+) True XLOC_037411
TCONS_00075194 lncRNA upstream 598795 45878659 ~ 45884134 (+) True XLOC_037410
TCONS_00075193 lncRNA upstream 602938 45865267 ~ 45879991 (+) False XLOC_037410
TCONS_00075199 lncRNA downstream 312735 46838646 ~ 46840389 (+) True XLOC_037416
TCONS_00075200 lncRNA downstream 328634 46854545 ~ 47316207 (+) False XLOC_037417
TCONS_00075201 lncRNA downstream 466659 46992570 ~ 47316207 (+) False XLOC_037417
TCONS_00074936 lncRNA downstream 622584 47148495 ~ 47156750 (+) False XLOC_037417
TCONS_00075202 lncRNA downstream 622588 47148499 ~ 47316207 (+) False XLOC_037417
TCONS_00073601 mRNA upstream 639450 45839260 ~ 45843479 (+) True XLOC_037409
TCONS_00073599 mRNA upstream 688735 45789887 ~ 45794194 (+) True XLOC_037407
TCONS_00073598 mRNA upstream 785285 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073597 mRNA upstream 815670 45605540 ~ 45667259 (+) False XLOC_037405
TCONS_00073604 mRNA downstream 118722 46644633 ~ 46684539 (+) True XLOC_037414
TCONS_00073605 mRNA downstream 219437 46745348 ~ 46799620 (+) True XLOC_037415
TCONS_00073606 mRNA downstream 1435571 47961482 ~ 47970760 (+) False XLOC_037418
TCONS_00073607 mRNA downstream 1435812 47961723 ~ 47967510 (+) False XLOC_037418
TCONS_00073608 mRNA downstream 1440256 47966167 ~ 47970760 (+) True XLOC_037418
TCONS_00073602 other upstream 51796 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 661344 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 942336 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 1148824 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 1418660 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 3259409 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 3563089 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 4274446 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 5556400 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 8722289 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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