RNA id: XM_039795968.1


Basic Information

Item Value
RNA id XM_039795968.1
length 2075
RNA type mRNA
GC content 0.60
exon number 10
gene id si:ch211-71n6.4
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 43817732 ~ 43848899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaagttctaaGGACATGCGCGCTCCGCTCAGAGGAGAAATAAATGCGTCAACTTCTTCAGTTTGTAGGAGTTTACTCTTTAATGCGTTGTATGTTTACAGGACATGAGCGACGATGAATGAAGATGCGTTCGAGGTCCCGGAGAGGACCGAGTACCGCTACCTggtgcaggaggaggaggagggggaggaggtgcAGTACGTGCGCCACAGACACTACATCAGCCCCCTGCTGGTGCTCTCCCGGCGCTGCATCTTCCTCATCTGCCTGGCCGTGTTCGCCCTGCTCTCTCTCGCCACCTACCTGGGATACCTGGCCCAGACGCTGCCGCAGGGCAGCGTCCAGGTGAACACGCACTGCGGCGCGTTCAGGGGACGCCACAAAAATGGCGCATACTCCTTTAAGGGCATGCCCTACGCGGCTCCACCTATCGGCAGCCTGCGCTGGGCCCCCCCGGCCGAACCGCTGTGCAAGGGCGGGGTGACGGACGCCGGGCGCTTCCGCAGCGTGTGCCCTCAGGTGCGTCCGCTGGCGAGCACGGGGCGGCTGATGGGCCAGGAGGACTGCCTCTTCGTCAACGTGTGGACGCCAACGCTGCAGCCGGACGCCAAGCTGCCCGTCATGGTCTGGATCCACGGAGGATACCTGCACATGCTCAGTGGAGGCGAGCCCGGCTACTCGCCCACCGAGAAGCTCGCCGCCGACACGCAGATGGTCTACGTCAGCTTCAACTACAGACTCAATGCCTTCGGCTTCCTGGCGCTGGAGGTGCTGAGAGAAGGTTCTCCGAAGAACACCTCAGgGAACTATGGCTTCCTGGACCAGATCGCAGCTCTGAAGTGGGTCCAGAGGAACATCCACGTGTTTGGAGGAGATCCCGGGAAAGTCACCATATTTGGACAGAGCTCAGGTGGGACCTCGGTGTGGACCATGATGATGTCTCCGCTGGCGAAGGGTCTCTTCCACGCCGCGGTGGACATGAGCGGCTCGTACGCGTACAACGCCACGCTGGAGCGGGCCGAGTCCGACAACCTGGCGTTCCTGAAGAAGACGGACTGCAGAGACGCCGGCTGCCTCAGACGTCTCTCCGTCAGACAGGTCCTGCAGGCCATCCCGTGGCAGGAGTTCCCCTCCTGGGCAGCAGATGAGATGACAGACCTCCCCGTCAGAGGGCGCTTCATCGGCCCGGTGGCCGTGGTGGACGGATACGTCCTGGAAGCTCCACCTTTCCAGGTGTGGGACAAGAAAGGAGACCACAGTGACGTTCCTTTTGTCGTCGGGACAACGGAGCAGGAGGCTGACTTCAGCCCGGCGGCTGCAAACATTTCCATGTGGACCTGGGGGGACTACCAGTGGTTCGTAACAGATAAACTTCAgtccttcagtgagaatctctCCAAAGACGCGTTGGAGCTGTACCCGAGCTCCGCGCCCTGCCCCACCACAGACCGCTGTCCGGAGAGGGCCTACACCACCATGGTGTCCGACATCAGGACCACCTGTCCCAACAACGACCTGGCCTGGAGGGCTGCAGCGGCCCTCGACAGTCCCGTGTACCGATACGTGGTGACACATACACCGTCAGGACCGGTTACCGCGTCTGGCGACCTGCTGCCGTTCCCCAGCCGCTTCTCCTTCCACTGTCTGGACGCCGTGACTTTCTTCGGCGGGCTGGAGTCCTTCCTGGGCAAACCTCTCTCTGATCGAGACAAGAGCTTCCAGGTTCTCATCACACGCCATCTCGTCAACTTCGCCAAAACAGGTAAGATGGCAGATGAGTGGCCAGAATACCCAGCAGCCACTGCTCTCCTGTCCGACAGCCTGACGGCGGTCCACAACTACTCGGCTGTTCGGTGTCAGCTGTGGAAGGACAACGGCCTGTACGCGTACGCCTGGACCAACTGACCGAGACAACAGACTGAAGGCAGCGTTCATCTGACCACTCAGTTATTAATTCATCAGCATGAGACTTTATTAAAGTCACTGCTTTGTTACACCGAGACGATCTCCCGTAGCAAGACCTCCGTCTCTCTCATCCAGCTCAGGTCctgccaatatatatatatatatat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45190 lncRNA downstream 322 43814747 ~ 43817410 (-) False G34008
TU45177 lncRNA downstream 40138 43776548 ~ 43777594 (-) True G34002
TU45152 lncRNA downstream 137521 43674649 ~ 43680211 (-) True G33981
TU45146 lncRNA downstream 185878 43631559 ~ 43631854 (-) True G33976
TU45117 lncRNA downstream 297837 43518953 ~ 43519895 (-) False G33960
TU45200 lncRNA upstream 7723 43856622 ~ 43876691 (-) False G34014
TU45199 lncRNA upstream 27039 43875938 ~ 43876691 (-) True G34014
TU45216 lncRNA upstream 104178 43953077 ~ 43953423 (-) True G34030
TU45217 lncRNA upstream 104593 43953492 ~ 43954001 (-) True G34031
TU45296 lncRNA upstream 151655 44000554 ~ 44001150 (-) True G34073
XM_039796164.1 mRNA downstream 19669 43766691 ~ 43798063 (-) True LOC120556522
XM_039795483.1 mRNA downstream 61559 43709700 ~ 43756173 (-) True LOC120556093
XM_039794592.1 mRNA downstream 321528 43479602 ~ 43496204 (-) False LOC120555671
XM_039796167.1 mRNA upstream 204274 44053173 ~ 44054851 (-) True LOC120556524
XM_039795877.1 mRNA upstream 597284 44446183 ~ 44477267 (-) False LOC120556335
XM_039795876.1 mRNA upstream 600160 44449059 ~ 44477267 (-) True LOC120556335
XM_039795598.1 mRNA upstream 684524 44533423 ~ 44650930 (-) True LOC120556176
XM_039795599.1 mRNA upstream 684524 44533423 ~ 44571355 (-) False LOC120556176
TU45172 other downstream 4507 43774610 ~ 43813225 (-) False LOC120556522
unassigned_transcript_147 other downstream 290079 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45036 other downstream 360885 43452712 ~ 43456847 (-) True G33914
TU44958 other downstream 602745 43214634 ~ 43214987 (-) True G33847
TU44891 other downstream 826962 42985223 ~ 42990770 (-) True G33796
unassigned_transcript_148 other upstream 88077 43936976 ~ 43937048 (-) True trnav-uac
TU45304 other upstream 236527 44085426 ~ 44089423 (-) True G34078
TU45552 other upstream 943083 44791982 ~ 44915666 (-) False LOC120556527
TU45551 other upstream 1038983 44887882 ~ 44890809 (-) False LOC120556527
TU45959 other upstream 1289757 45138656 ~ 45180300 (-) False G34518

Expression Profile