RNA id: XM_039795970.1


Basic Information

Item Value
RNA id XM_039795970.1
length 2014
RNA type mRNA
GC content 0.51
exon number 10
gene id sh3gl3a
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7232548 ~ 7290870 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGCTGCAATCTTGAACGGTAGTGACTGATGAGTGTAGTGTTGTGGAGTCGTCTGGCTGGCTCTGTCTTCAACGTACATTTTACCAGTTTTATTCAGTGTTTAACGGAACATTTCCTCGAGAGGTGAAGCCTTAACACGTCTATCGAAGATGTCTGTGGCCGGACTGAAGAAACAGTTCCACAAAGCCAGTCAGCTACTCAGTGAAAAGATCAGCGGGGCCGAGGGGACCAAGCTGGATGAAGACTTCATGGAGATGGAGAGGAAAATTGAGGTGACCAACAAGTCGGTGTTTGACCTTTTGTCCAAAACAACAGAATACCTCCAGCCTAACccagCCTCTCGAGCCAAACTGAACATGCTGAACACGGTGTCGAAGATACGAGGGCAGGTGAAGACCACGGGCTACCCTCAGAGCGAAGGCCTGCTGGGAGACTGCATGCTGCGCTACGGCCAGGACCTGGGAGAGGACTCTGTCTTTGGCTGTGCTCTGTTGGACATGGGCGAGGCCATGAGGCAGATGGCAGACGTGAAGGACTCTCTGGACATAAGTGTCAAACAGAACTTTATTGACCCGCTGCAGACTCTACAGGACAAGGACCTGAAAGAGATCACGCACCACCTGAAGAAGCTGGAGGGCCGGCGGTTGGACTTTGACTATAAGAGGAAGCGTCAGGGGAAGATCCCTGACGAGGAGATCCGGCAGGCTGTGGAGAAGTTCGACGAGAGCAAAGAGCTGGCCGAGAGGAGCATGTTCAATTTCCTGGAGAATGACGTGGAGCAGGTGAGCCAGCTGGCGGCGCTGATCGAGGCGGCCGTAGACTACCACAAGCAGTCGTGTGCGATCCTGCAGGAGCTCAGCGGGAAGCTGCAGCAGAGGATATCCACAGCCAGCAGCCGGCCCAAAAGAGAGTTCAAACCAAAGTCTATCAGGAGCAACGTAGACCTCCTGGACAACAGTCAGCACAACGGCCTGTCCTACCGCTCCTCGCTCCGATCCACTGCTGATCATATAACCTCTGTTCCTCTGACATGGCCCGAGAGCCCCACTACCAATGGCGACGCTCACCAGTCCGAGCTGTTGGACCAGCCATGCTGCCGCTCGCTCTACGACTTTGAGCCGGAGAACGAGGGCGAGCTGGGCTTCAAGGAGGGCGACatcatcatcctcaccaaccAGATAGACGAGAACTGGTACGAGGGCATGATCCACGGCGAGTCGGGCTTCTTCCCCATCAACTACGTGGAGGTGATTGTACCCCTGCCTCAGTGAACGCCGGCACCTGGAGTCCCGCACAGACTCCAAACGCCTTCCTCGCCCCACTCAGCCTCTTTGGCCTCTGGCCTCAGCCCGACTCGGGACGCGACATGCACGTGGGGCCAGCTCAGCCCCAAGGTGGGAAAACAAATCCAGTCTTCTGATTTTCAAACCGAGCCAGAGAGGTTGTACTGTAGTTTGGTCCCAAACTGACTTAAGTTCAAATTTCCCAgattacgttgtttttctcTGATGATATTTCTGAACCTGAAGCCAACTGAAACCCAAGCCATTAAGTGGGACGCTCTGCCTGGCTGGACCCTTTGTGTCCTTTGGGTCCTGaccaaggtaaaaaaaaaaagtctaacagTCGTCAAACTCTGTAATCCATCCTGTCAGCCCCTCCGATGACGCTGATCTGCTTGATCTGTGTAAACTGCCTGCCTCACCACAAGCCGAGGCTCATTAACATCTTTTAAAGTTCACTGCTGCACATCATGACCAAATTTTTTCTAACTACAAACGACTGATTTGCTTTCATTTGCATCATAGTAGAGctgtgtgatttaaaaaaaaaaaaatcaaatatcacaatattttggaCCAAATGCATCAATGTCCATATCACGCGGCGATATTGTATTGACTATtgttgctttcacaaaatactaacacaatgagagtttggataaataatcaccaataatgtggatacaatgactaagtgggtaaaggcaaataacagaacagctagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638846.1 lncRNA upstream 187387 7042183 ~ 7045161 (+) True LOC120556370
TU34746 lncRNA upstream 206787 7023866 ~ 7025761 (+) True G25902
TU34734 lncRNA upstream 226901 7002428 ~ 7005647 (+) False LOC120556365
TU34739 lncRNA upstream 239344 6992995 ~ 6993204 (+) True G25895
TU34737 lncRNA upstream 240617 6987512 ~ 6991931 (+) True G25893
TU34791 lncRNA downstream 7629 7298499 ~ 7298701 (+) True G25942
TU34800 lncRNA downstream 39840 7330710 ~ 7337252 (+) True G25950
XR_005638763.1 lncRNA downstream 339252 7630122 ~ 7632825 (+) True LOC120555850
XR_005638762.1 lncRNA downstream 341961 7632831 ~ 7634497 (+) True LOC120555849
TU34815 lncRNA downstream 374926 7665796 ~ 7673941 (+) True G25959
XM_039795696.1 mRNA upstream 20971 7186729 ~ 7211577 (+) True bnc1
XM_039795921.1 mRNA upstream 226870 6993956 ~ 7005678 (+) True LOC120556365
XM_039794210.1 mRNA upstream 736827 6493937 ~ 6495721 (+) True LOC120555501
XM_039796247.1 mRNA upstream 837744 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 837746 6382571 ~ 6394802 (+) False rwdd3
XM_039794993.1 mRNA downstream 27039 7317909 ~ 7330702 (+) True LOC120555848
XM_039794992.1 mRNA downstream 27041 7317911 ~ 7330702 (+) False LOC120555848
XM_039794981.1 mRNA downstream 64007 7354877 ~ 7670801 (+) True adamtsl3
XM_039794983.1 mRNA downstream 64007 7354877 ~ 7600359 (+) False adamtsl3
XM_039795115.1 mRNA downstream 484763 7775633 ~ 7783499 (+) True LOC120555922
TU34538 other upstream 942772 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 942772 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 944471 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 965840 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 1179651 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 1462831 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 1777859 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 2275961 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2556407 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 4740751 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile