RNA id: XM_039795977.1


Basic Information

Item Value
RNA id XM_039795977.1
length 1359
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC120556394
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21352531 ~ 21362696 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTCGCCTGAACGGCACGGCACAGCTCTGCTGGTAGGGGGCGACACGGCGTAAGACGAGTCTGTTCTGCTTACCACTGAAAACTTTGGCAACAGCGAAAGGAATTAGCTAGCACACCAATTACTGTATTAGTTTCTAAAACTGTCGTGATCGGCGGTGATGCTGGGGGTGGCTGGAATGACGGGCAGCATTGCTAATGCCCTGGCCAGTGCGGCCTGTGAGCGATGTAAGAGTGGCTTTGCTCCAACTGAGAAGATTGTCAACAGTAATGGAGAGCTGTACCATGAGCAGTGCTTTGTGTGTGCTCAGTGTTTTCAGCAGTTCCCAGATGGACTCTTCTATGAGTTTGAAGGAAGAAAATATTGTGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGGGAGTTCATCATTGGTCGTGTCATTAAGGCCATGAACAATAGTTGGCACCCTGACTGCTTCTGCTGTGACATTTGCCAGGCTGTGCTTGCAGACGTGGGGTTTGTCAAAAATGCTGGCAGGCACCTCTGTCGACCATGCCATAACCGCGAGAAAGCTCGTGGCCTGGGCAAGTATATCTGCCAGAAGTGCCATGCCATCATCGAGGAGCAGCCACTGATCTTTAAGAATGACCCATATCACCCAGACCACTTCAACTGCAGCAACTGTGGGAAAGAATTGACAGTTGAAGCCAGGGAACTCAAGGGAGAGCTCTTCTGTTTGCCCTGCCACGACAAGATGGGTGTACCAATCTGTGGCGCCTGTAGGAGACCTATTGAGGGGCGTGTTGTCAATGCCATGGGCAAGCAGTGGCATGTGGAGcattttgtgtgtgccaAGTGTGAGAAGCCTTTCCTCGGCCATCGGCATTACGAGAGGAAGGGATTGGCTTACTGTGAGACTCATTATAACCAGCTCTTCGGCGATGTGTGCTATCACTGCAACCGTGTGATTGAAGGCGATGTGGTGTCTGCTCTCAACAAGGCTTGGTGTGTCAGTTGTTTCTCATGCTCCACCTGCCACACTAAACTCACTCTCAAAGATAAGTTTGTTGAAATTGACCTGAAGCCGGTATGCAAGCACTGCTACGAGCGCATGCCTGAGGAGCTGAAACGACGCTTGGCTCGGCGTGAGCGTGATGCCAAAGACCGCAAGAAAAAAGCCGCTGTCTGTCTGTAGTGTGGTTATTGTTCACAACTCACCACTCCATCCTTGGAACAAGTTTGTTGAGTTTGACATGAAGCCTGTTTGTAAAAAGTGTTATGAGAAGTTTCCTCTGGAGCTGAAGAAAAGGCTCAAGAAGCTAGCCGAGTCCTTGGGACGCAAGTAAACTGCTCCTGGCCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38267 lncRNA downstream 106697 21246351 ~ 21246566 (-) True G28799
TU38265 lncRNA downstream 131818 21221136 ~ 21221445 (-) True G28797
TU38264 lncRNA downstream 214886 21138049 ~ 21138377 (-) True G28796
TU38261 lncRNA downstream 279359 21073550 ~ 21073904 (-) True G28793
TU38247 lncRNA downstream 476977 20876032 ~ 20876286 (-) True G28782
TU38447 lncRNA upstream 217272 21579968 ~ 21580687 (-) False LOC120555658
TU38448 lncRNA upstream 217272 21579968 ~ 21580687 (-) False LOC120555658
TU38544 lncRNA upstream 523892 21886588 ~ 21889432 (-) False gpc6a
TU38556 lncRNA upstream 781557 22144253 ~ 22144464 (-) True G29022
TU38557 lncRNA upstream 798930 22161626 ~ 22162235 (-) True G29023
XM_039795143.1 mRNA downstream 363038 20920944 ~ 20990225 (-) True pcdh17
XM_039795473.1 mRNA downstream 855538 20475627 ~ 20497725 (-) False tdrd3
XM_039795472.1 mRNA downstream 855538 20475627 ~ 20497725 (-) False tdrd3
XM_039795474.1 mRNA downstream 855538 20475627 ~ 20497725 (-) True tdrd3
XM_039796124.1 mRNA downstream 1074077 20253713 ~ 20279186 (-) True LOC120556479
XM_039795987.1 mRNA upstream 6216 21368912 ~ 21371958 (-) True txnl4b
XM_039795985.1 mRNA upstream 11518 21374214 ~ 21380699 (-) False blzf1
XM_039795986.1 mRNA upstream 11518 21374214 ~ 21380536 (-) True blzf1
XM_039796002.1 mRNA upstream 52511 21415207 ~ 21419254 (-) True LOC120556407
XM_039794740.1 mRNA upstream 91771 21454467 ~ 21472489 (-) True gas6
TU37839 other downstream 2226887 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 2226887 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 2291113 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 2633244 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 2932764 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 218346 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 1514935 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 1553158 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 1936846 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 2550659 23913355 ~ 23958933 (-) False apba2b

Expression Profile