RNA id: XM_039795983.1


Basic Information

Item Value
RNA id XM_039795983.1
length 2793
RNA type mRNA
GC content 0.52
exon number 13
gene id ercc5
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21381209 ~ 21390547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCCCGGACAGAAATAGTGTAACAGTCAACAATAAACGTTGAAAAGTGCCGCAGTTTGTGCCGTGCAGATTCTTATTTTACACTTTAGTGATTTCTGAGTTGATATGAAAACATGTTCAGATAAGTGAAGCAcgattcatttgtttttgtgtttcagttTTTAATCTTCACAGTATTTCGGTTGAGGTTTGGTTATAATGGGAGTGCATGGACTCTGGAGGCTGCTGGAGAGTACAGGGAAACCCATCAACCCTGAGACTCTGGAGGGAAAGGTCCTTGCTGTTGACATCAGTATATGGCTGAACCAGGCAGTGAAGGGGGTGAGGGACCGTGAAGGCAACAGTGTCCAGAACGCCCACCTCCTCACTCTCTTCAACCGCGTCTGTAAGCTGCTCTTCTTCCGCATCAGGCCAGTCTTTGTGTTTGATGGGGACGCACCACTGCTGAAGAAACAGACTCTGGCTCTGAGGaggcagaggaaagaggagttGAGCCGGGAGTCCAAACAGACCAATGAGAAACTTCTCAAAACATTCCTGAAGAGACAAGCGATCAAAGCTGCACTTGGAGACCGCAGTAAGGATCCTCTACCCAGCCTCTCCACTGTGAGGAGAGATGAGGTGGACGACATTTATGTTCTACCAGCCCTGCCAGCTGCAGAGGAGAAGGACCAAAACAGttctgaggaggaggaggaggaagagaaagagttAGAGGAGACAGACAACGGCCATCACATGTATCAGGGAGAATTGTATGAAGACCCCAACTCAGTGGACATTAACTCAGAGGAGTTTGCCAGCCTGCCTCCTGAAATGAAACATGAGATACTCAAAGACATGAAAGAGTTCTCCAAAAGACGTCGGACCATGTACCACAAACCCCCAGAGCATTCAGGAGACTTTTCACAGTACCAGCTTGCCGGCCTGCTGCAGAGGAACAAGCTGAACCAGCGACTGCAGGGTGTGGAGAAAGAGATGAGCCAGCAGAGCACCGGCAGCGCTCCACAGCTCTGCCAACTGGACGGGGACCAGCAGAGGCACAGCGTAGAGTCACACCGACTGGTTTCAGAAGACTATTCCCACTATATCCTTATTAAAGGCTCCAAGAAGAGCGAGACTGCCCCCGAGAGCCGACCCGCAACCGCAGCCTGGTCTGGGAGCTCCCTGACGGGCTGCGAAAGACGAGCAGCGGACAGACCTGAGCCACTGTGGCGTCCTGCTTGTGAGGACGAAGCAGAAGTGCAGGGTCCCTCCTCAAAAAACTCCAAACCGTCTGTCTTCAAACCGTCTCTGGGAGACACATCACCTCCCTCGCCTCGTACGCTCAAGGCGATCCAGGCTGCGATGAGCGACAGCTCAGACGAGGAGAAGGTGGACCGTGATAAGGACGGCCGTGTGTCCCCGCGCACCCTGCTGGCAATCCAACAAGCTCTAGCGGAGGAGGAAGATGACGCTGCCGTACACAGCACTCTAATCAGCAGCACATCCACCAAACTGCAGGCGAATATTCATCATCCTGGGCCACAAGTGGTCATCAGCAGCTCAGAGGAAGAGCCAAACCCTGGAAACGTGAGCCCTTTGCCTAATGAAAGATCCGATTGTAAGGGGAACCCAACAGGCCAAAGTTTACACGTGGAAGATGGTTTGTTTGTTAGTAGTTCTGAAGATGAGATGGAGAGTGTGATCGGTCAGAGAAATGAAGCACTTCGCTTTGCGGCGCAGCAACAAACTCCTGAGACAGAGATGAAGTCCGAAGAGGAGCTAAAGAAAAGACAGTTGACAGAGGATATACGGACGGGAAGTAGAGGACAGATGGAGAAACCAGAAGAGCTGGAGGGATTGAACACAAAGCCTCGGGCTGCTTCCAATCAAAACTCATCATCCATTAATCTCTCTGCTCAACTATTTGGAAAACCTCTCAGTGCAGAGACTGAAATTCATCCTGCGTTGTTAACGCAGAGGAGCAACGAGATGATTGAAGCTCAAGGGGAAAGGAATGGAGATGATGTGAAGTCGGAGGGCAGCGAGGAGAGCGAGTCAGAAGAGAGCTTCATCGAGGTGTCCGACGAAGAATTTCCAGAGGAGGATGCAGACGACTCCCTAGTAGTGACGGGAGAGAAAGGGTCTCCAGATGAGGCCCGTAGAGACGAGACCAAGCAGGAAGAAAACCCAGAGCAAGGTTTGACCGAGGCTCCAGCTGCTGCTTTGGAATTAGAGGAAGAAGACGACAAAAAGAGACGGACGGAAGAGAAAGCGCTAAAGGAGGGAACAGAGACCGAAGAATCCAGCTCAACTCCAGCAATCAATGAATGGGAACACTTTGATGTGGATGAGCTGGAGGCGCTGGAGAGCTCTCTGCAGGCGGAGCAGAGCAGCCTGAGGGAGCTGAAACAGCAGCAGGAGAGGATGGCGAACACGGTCACTGGACAGATGCACCTGGAAAGCCAGGAGCTGCTGCGGCTGTTTGGCGTGCCGTTCCTTGTGGCACCGATGGAAGCCGAGGCTCAGTGTGCAGCACTCGACCGCGCCGAACACACACACGGGACCATCACAGACGACTCAGACGTGTGGCTGTTTGGAGGGAGACACGTCTACAAGAACTTCTTTAGCCAGAACAAATATGTTGAACACTACCAGTACAGTGACCTACAGAGCCAACTGGATACCCTGACTTTTATGTGTCTGTGAAAGACAGgcCTGGACAGGACCAAACTGATAAACCTGGCTTATCTGCTTGGAAGTGACTACACAGAGGGCGTGCCGGGGGTCGGATATGTTACTGGCATGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38272 lncRNA upstream 59584 21321312 ~ 21321625 (+) True G28804
XR_005638733.1 lncRNA upstream 238019 21142725 ~ 21143190 (+) True LOC120555568
TU38260 lncRNA upstream 307454 21073541 ~ 21073755 (+) True G28792
TU38243 lncRNA upstream 554732 20826224 ~ 20826477 (+) True G28778
TU38242 lncRNA upstream 583538 20797412 ~ 20797671 (+) True G28777
TU38321 lncRNA downstream 20858 21409652 ~ 21412834 (+) False LOC120556583
XR_005638869.1 lncRNA downstream 21059 21409853 ~ 21413209 (+) False LOC120556583
TU38322 lncRNA downstream 22259 21411053 ~ 21412834 (+) True LOC120556583
TU38327 lncRNA downstream 39845 21428639 ~ 21433147 (+) True grk1a
TU38332 lncRNA downstream 136798 21525592 ~ 21562797 (+) False tpp2
XM_039795984.1 mRNA upstream 7067 21372157 ~ 21374142 (+) True trmt10c
XM_039795974.1 mRNA upstream 29145 21331153 ~ 21352064 (+) True nkpd1
XM_039795976.1 mRNA upstream 29145 21331153 ~ 21352064 (+) False nkpd1
XM_039795975.1 mRNA upstream 29145 21331893 ~ 21352064 (+) False nkpd1
XM_039796125.1 mRNA upstream 93235 21286843 ~ 21287974 (+) True LOC120556481
XM_039796068.1 mRNA downstream 32316 21421110 ~ 21433147 (+) False grk1a
XM_039795537.1 mRNA downstream 45465 21434259 ~ 21453303 (+) True LOC120556135
XM_039794536.1 mRNA downstream 155704 21544498 ~ 21562814 (+) True tpp2
XM_039794537.1 mRNA downstream 155704 21544498 ~ 21559256 (+) False tpp2
XM_039794550.1 mRNA downstream 207537 21596331 ~ 21603868 (+) False dcun1d2b
TU38234 other upstream 620062 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 1860991 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 1882985 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 1883336 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 1893676 19487246 ~ 19487533 (+) True G28581
TU38307 other downstream 7419 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 1158407 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1375925 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 1478926 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1603343 22992137 ~ 22992502 (+) False LOC120555548

Expression Profile