RNA id: XM_039795985.1


Basic Information

Item Value
RNA id XM_039795985.1
length 2805
RNA type mRNA
GC content 0.47
exon number 7
gene id blzf1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21374214 ~ 21380699 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAGGGCACTAATCGCCCCTTTCAAGATCAGGCCAACTGTGTCCGGTGACAAAATAAACAGCTTTAGCTTGCAGCTTCTTACCAGCGAATTAATCGAGGTGGTTGGACCCTGTTCCCGGCTGGACGACGAGTCACCGGGTTTCACCTGAACTCTAACAGACTTCCTTCTCAACTACCACCACCTCCACCATGACTGCTGCTGTGAGGGCCCCTGCCAGTGTGCCTATCCGAGGCACTGGCGACGGCATGGAAACTGAAAAACCGCCCGCCATCCTGGAGGTAAACACGGAGACACTGCCACCAGGTCCGTCTGCAGTTCCCCTTCTTAAGGTGGCTAGCCCCAAACACTGTCCCAAATCTACCCATCCCGCTCCCCCCCAGCCTCTCGGGGTGCTCCACCTGGGCAGGGTGAGTCGAGAGGCCTGCACGGAGGTGGAGGCTGTGAGGATCATCGTCCCACGTGCTGCTATTAGCCGACACACCCGTACAAGACCTGCCGAGGGCAAAGGGGAGGCTGGGCAACAGACTGAGGAGCAGGGCTCTCCCCCGCTGCCTCTGGTGGAGGACTGGAGAGGACAGCTGGATAAGCTGCAGAACTCTGAACGCAGGCTGCTGCAGGACAAGGAAGGGCTTTCCAATCAGCTCCGTGTGCAGACAGAGGTGAACCGTGAGCTGAAGAAACTGCTGGTGGCGTCGGTGGGTGATGACCTTCAGTACCACTTTGAGCGTATGTCACGGGAGAAGAACCAGCTGATTCTGGAGAACGAGGCTCTAGGCCGGAGTCTGGCGCACACCGCAGAGCAGCTGGAGCGAATGAGTATCCAGTGTGACGTTTGGAGGAGCAAGTTCCTGGCCAGCAGAGTCATGGCAGAGGAACTGACGAATGCCAGAGCAGCGCTGCAGAGACAGACCAGGGAGGCACAAGGAGCTATCCAGGACCTGCTGTTAGAGAGGGAAGAGTTCTCCAGCAACATGGTGCTCACTCACAGATCTCTGGAGCAGCTCCTGGTGTCCCTGCAGTGGGGTAGACCGCAGACGTACTACCCCAGCGCGCAGCCCCTCAGCACCGGAGATCTGgcagcagccaatcacaagcTAGCAGACGCCATCAACTCCCACCTGCTGGGTAACACCAGCAGCGCGGCGGTGAAGAGCAGCAGCGCTACGGCGGAGCAGCTGTGCAGCACTCCGGCCGAGAAGATGGCTGAGAAGGTGCTGAAGAATTTGGATCCAATTTCCTGTTCAGAAAACGCAGCAGACCCTCCGCTCAGCGACTCCACCCCCTCAAACTTTCTCAGCAATAAGAAGAGCATCGGCAGGTTTCACCCATACACCCGCTACGAGAACATTACTTTTAACTGCTGCGAGCGCTGCACCGGAGACATCCTGGTGCTGTAGCTGGGTGGAGGAGCAGCAAAACGTCCCCATTTGGCACCAGTGCAGCATCGGAGCTTTTTACAAAATGACTTGAGATCTGAACAGGAGTGTATTCTGGGGGATATTAATGTTCTGTGTCAACTTCTGCTCCTTCAGTCAACACCAAAAGTTAGCTTCTCCAGCAGACATTTCTTTTTGTATCAGCTACCCATTTTAGCGCGTTGCATCTCTGATCTTTGGATTTCCACAAGTTCAGAGGTTTTTAAACTTGATCAACCTGCTGTTAATTTTGCTCGCTTcaacctggaaaaaaaaaaaatgggagtTTGTTCAGGGATCGTGATGTGAAAGTGCCGAAAACCGAATGCTTTTCAGAGCCATTGTAGTCTGGTTTAAACTATGGGAAAAAAAGGCTATTTATTGTGAGATCAAGATGAGTCAGTGTTACGTGGTGAACAGACAGTGTCTGCTTATTCAAACTTGAATATACGGTATTacgtgttatttacataatctTCTAAGTCAATGTGCAAATAATAGAGCAAACGGGCTGTAttgattagggttgggcattgtttggattttaacgattctgattccacttccgattccggttcttatagATTCTCGATTCAGATTTAGTTtcagttgaaacgggtcacatgcctattttcagttttgacaaggctttttcaatgtgaaataaagccacactagagcactgcttactgttgaaaccaaatcctctaaaCGATTCCAATGAAGAAACGATTctactggaatcgtaatttttgaaaccattccaagtaggaatctgttctcgatgcccaaccctagtattGATACGTTTTGAGTTTTGACCCGGCCGGCTGTTATGGGAACACCCTCCAGGAAGTTAACGGACGTTGAGCTAATTGTACAGTCGCACGTGCTCTGTAGGACTCTGCAGGGCTGTCCCCAATTTCTCGATATGATGGTGCTATTATATTGAATTAATATATTTTGTACAATGCATGCTGCAAAAGCATTATATTATACATTGAATATTTTGGAAGTGATTGACGGTACTACAATAGATTATTATTGTACAcacttgtgtaaaaaaaaatccaatatttgaaattactattttttttttttatgtcattcCTATTGGGTGATGTTTTTGTAATTCATTTAAgaatgtggttgttgttttttttgcctcagAATACACTACTATGAAATGACGAGTAATGTATTGCACATGCCTTTTTGCAATTTTCTAAACCCAAGTTGTATAATATTGTAGTTTACCACATCTGTTTGGAAAGGTTTGCATTTATGGTGACAGTAAAAGTTACAGTGAAAGCACACCATAAcaaatatttatacattttttttcatccatGTCAGACCAAAATAAAGACCAAAGTAGTTTCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38267 lncRNA downstream 127648 21246351 ~ 21246566 (-) True G28799
TU38265 lncRNA downstream 152769 21221136 ~ 21221445 (-) True G28797
TU38264 lncRNA downstream 235837 21138049 ~ 21138377 (-) True G28796
TU38261 lncRNA downstream 300310 21073550 ~ 21073904 (-) True G28793
TU38247 lncRNA downstream 497928 20876032 ~ 20876286 (-) True G28782
TU38447 lncRNA upstream 199269 21579968 ~ 21580687 (-) False LOC120555658
TU38448 lncRNA upstream 199269 21579968 ~ 21580687 (-) False LOC120555658
TU38544 lncRNA upstream 505889 21886588 ~ 21889432 (-) False gpc6a
TU38556 lncRNA upstream 763554 22144253 ~ 22144464 (-) True G29022
TU38557 lncRNA upstream 780927 22161626 ~ 22162235 (-) True G29023
XM_039795987.1 mRNA downstream 2256 21368912 ~ 21371958 (-) True txnl4b
XM_039795977.1 mRNA downstream 11518 21353263 ~ 21362696 (-) False LOC120556394
XM_039795979.1 mRNA downstream 11521 21352531 ~ 21362693 (-) True LOC120556394
XM_039795980.1 mRNA downstream 11769 21353263 ~ 21362445 (-) False LOC120556394
XM_039795978.1 mRNA downstream 12474 21353263 ~ 21361740 (-) False LOC120556394
XM_039796002.1 mRNA upstream 34508 21415207 ~ 21419254 (-) True LOC120556407
XM_039794740.1 mRNA upstream 73768 21454467 ~ 21472489 (-) True gas6
XM_039794741.1 mRNA upstream 94235 21474934 ~ 21483609 (-) True pros1
XM_039794742.1 mRNA upstream 96742 21477441 ~ 21483612 (-) False pros1
XM_039794543.1 mRNA upstream 103983 21484682 ~ 21545256 (-) False rasa3
TU37839 other downstream 2247838 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 2247838 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 2312064 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 2654195 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 2953715 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 200343 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 1496932 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 1535155 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 1918843 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 2532656 23913355 ~ 23958933 (-) False apba2b

Expression Profile