RNA id: XM_039795987.1


Basic Information

Item Value
RNA id XM_039795987.1
length 2273
RNA type mRNA
GC content 0.38
exon number 3
gene id txnl4b
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21368912 ~ 21371958 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTGTCGCACAGCAATAATGACGTAATTTCCTCCTGTTAGCACAACAAGGGAAAGCTAAATTCTTAGCCTCGAAAATGAGTTTGTTTTTGCCTAAATTAACGTGCAAAAAAGACATAGATGAAGTTATCAAATGCGTAGCAGAGAAAGTCGTAGTTTTGAGGTTTGGGAGAGACGAAGACTCGATTTGTCTCCAGCTCGATGAGATTctgtCCAAAACTGCACATGGCCTAAGCAACATGGCGTCCATCTACATTGTTGATGTGGATAAAGCTCCCGTCTACACAAGATATTTTGACATCAGTTACATCCCCTccactgttttctttttcaacGGACAGCACATGAAAGTGGATTATGGCTCTCCAGATCACACCAAGTTTGTCGGCAGCTTTAAGACCAAACAAGATTTCATGGATCTGATTGAAGTCATATACAGAGGAGCCATGCGTGGGAAGATGATTGTCCAGAGTCCCATAGATCCACAAAATATTCCCAAATATGATCTCCTCTACCATGGGATTTAAAATCAACTCCTCCACTTTGCGGCCTTATTTCTTTCTGAGTGGCATCAACCACGTCTGGTTgattgactgaaaaaaaaatagctttacCTTTCAAGCCACCATCTGAAGAAGGTTTGATATTAAAGCGTCTCATGTTCATTTTCATATAGATGGCAAATGACAAAGTACATTGCTCTGTATTCCTTTTCCTCTTGCTATGTTTAAAGATTCCCTTTGTAGGTTTTTTCTTAATGATCTTAACGCTATAGAgtgatgtttttatgtgtggTTGCCAGTTTTGTTTGCTCTAATGCACGTGTCCTGCACACATTCCCGCCGGTTTCACTATCAACaggtaacatttaaaaaaaaacacactaatgTGAAGTCACTGTGACACAGTGGATAAGAAGACTTCAAGGCagtaaacatggatgtaaacaaaaCAGGTTTCAAACTTTTAAGAAAAAGTTAAGAAAATGCATTAAATATGTTTGTTAGAcctaaaaaatacacacaattaGTCTTGGTAATGAACACAGActgtaaacacaaacatttgtttgtttacaagaaaactccaatgggcattttttttttttttgtaaatacagTTACTACCAATACCATAAGCTGTTTACAAACATGGACTATgcatctccacttcctcccactgtacaaaagtgaagccaaaatattcCAGACACGGGCGCTGGCATCTTGTACTTTTTGGAGCCAGAGGCAGCGCAGTAGTGATCGGGCGGTGAAGCCACGTTATCAACATCCCGCCCGACCAATTGCAAgtcaatcatgacgtttcaccctgttttagcatcaaataactaataaaacctAACTTATCAGAAAATTAAACACTTGAACAAAACAACGTCAtaagaactacctaaaatgacagaaacaatCTTTGGGGCAAAAATCACTTGATGTTTACTTTGGTTTTTTAGTTTAGCCCATGTCCCATCCACTAACATGGAGGGGGTGGGGATATTATGagctatactgcagccagccaccagggggcgttTGAGAcatttggcttcacttttgggAATTTAAGAGTGCAGATCTGGCCGcgtttttctgtccgagcccggcctgtgtccgacagagcagtaactgAACCCAAACTGAGCCCGACACcgttaaaatctcttttttttcctcatactaatgacccgtttgtttgtgtggaaagcccacttttattaagcaactgtaggaaggcattcggaaatgtcaacaagcgcacgttaacacacctacataataagctgttttaaatttaaaatgttcaatgccttatcgcgctgatgtgaccgagcccgacccaaaACTGAACATAATTTCTAAACATCTGTCcggctcggttcgggtatccaatCTCTATTGGGAATCTGTCAAGCCGTTCAAATTTATATACACTCTACGATCAAGACAGGTTGGAAAGACTGAGATGTATTGACATTTTTGACTTTTCAAGATATGAGTTCCCAAAGTCAAATTTATTAACAGCAGGACATTTTTATCAATGAAAAACAATTTGATATTTCCCAAAAAATCTTTTGTCTCATGTTTGATAGAGACAATGTGAGTTTTGATAAGGTTCTGCAACTGTATTctgaatttatttattgtaaatatGCAGTGTCAACTTGATGTTTCCTGTGGAAAAGAGCTGTATATCATCAGAAATATACAATTAATTTAATGTACATgctctttttttgtaataaacttttattttaga

Function

GO:

id name namespace
GO:0005681 spliceosomal complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38267 lncRNA downstream 122346 21246351 ~ 21246566 (-) True G28799
TU38265 lncRNA downstream 147467 21221136 ~ 21221445 (-) True G28797
TU38264 lncRNA downstream 230535 21138049 ~ 21138377 (-) True G28796
TU38261 lncRNA downstream 295008 21073550 ~ 21073904 (-) True G28793
TU38247 lncRNA downstream 492626 20876032 ~ 20876286 (-) True G28782
TU38447 lncRNA upstream 208010 21579968 ~ 21580687 (-) False LOC120555658
TU38448 lncRNA upstream 208010 21579968 ~ 21580687 (-) False LOC120555658
TU38544 lncRNA upstream 514630 21886588 ~ 21889432 (-) False gpc6a
TU38556 lncRNA upstream 772295 22144253 ~ 22144464 (-) True G29022
TU38557 lncRNA upstream 789668 22161626 ~ 22162235 (-) True G29023
XM_039795977.1 mRNA downstream 6216 21353263 ~ 21362696 (-) False LOC120556394
XM_039795979.1 mRNA downstream 6219 21352531 ~ 21362693 (-) True LOC120556394
XM_039795980.1 mRNA downstream 6467 21353263 ~ 21362445 (-) False LOC120556394
XM_039795978.1 mRNA downstream 7172 21353263 ~ 21361740 (-) False LOC120556394
XM_039795143.1 mRNA downstream 378687 20920944 ~ 20990225 (-) True pcdh17
XM_039795985.1 mRNA upstream 2256 21374214 ~ 21380699 (-) False blzf1
XM_039795986.1 mRNA upstream 2256 21374214 ~ 21380536 (-) True blzf1
XM_039796002.1 mRNA upstream 43249 21415207 ~ 21419254 (-) True LOC120556407
XM_039794740.1 mRNA upstream 82509 21454467 ~ 21472489 (-) True gas6
XM_039794741.1 mRNA upstream 102976 21474934 ~ 21483609 (-) True pros1
TU37839 other downstream 2242536 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 2242536 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 2306762 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 2648893 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 2948413 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 209084 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 1505673 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 1543896 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 1927584 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 2541397 23913355 ~ 23958933 (-) False apba2b

Expression Profile