RNA id: XM_039795990.1


Basic Information

Item Value
RNA id XM_039795990.1
length 3453
RNA type mRNA
GC content 0.49
exon number 14
gene id cdh15
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22713300 ~ 22751941 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgctctttgtctctctgtaaaacactgttgttttaaaaaaaagtttacttacttacatgACAGTGGAGACTGTGATGTCTACACCAACAGCtgccctgcctctctctctccctccttctgtctctctctttctctcatcggTCTGTGAGTGACAGCACATGTGCTGGGGTACATGGGAGGGCCGCTGCTGAAATTCTAACCCCTTACCCCACGACAGTGAGACATACTCCGGCTATGGACAGGGAGGAGCTGTGAGAGACAAACGCTgggagaggaaaggagggacagagagacagcaagAGCAAGAGCatagagagaaggaaagagaggaaaaagttTCAGGGTTGGAGAGTTTGGCCTTTTTCATCAAGTAGAGCCACTCAGGAGCCCAGTTCTTACTAAAGGAGCCTCAGATCTTTCAGTCATCAGGGGCCTGTTCATACTGAGTTTCTGAGTGCAGGTACTGAGGATGGCGGTACAGAtgttgatggtgtgtgtgctggGTGCTCTGCTTTGTCAGATGTGGAGCTGTGCAGAAGAAGAGGCCCTTCACCCATGGAGAAATCAAGGCAAGGGAGTGGTCAGAGTGAAGAGGGACTGGATCATCCCTCCAATCAGAGTGCTGGAGAATAGCAAGCAGGTTCCCGAAGACCTTGTCCAGATCAAATCGGACAAAATCTTCACAGGTGAAGTGATCTACAAGCTAGAGGGGCCGGGGGTGGACCAGGAGCCCAAGAATCTGTTTGAGATTGATGATAAAACTGGAATAATCAGGAGCAAGCGGCCgctggacagagagagacacaacagCTTCACGCTCAAAGCCTTTGCGCTGTCCCCCAGTGGAGAGAGACTAGAGAATCCGTCCACCATAGAGATAGTGGTGCTGGATCAGAACGACAACAGACCTGCCTTCACCCACAGCCAGTTTGGTGGCATTGTCTCTGAGTTCTCAGTCCCAGGCACCTCAGTGATGTCAGTGTCAGCCACTGATGCAGATGACCCAATGACAGAAAACGCTTTCCTGAGTTACTCCATCATTGGCCAGGAGAGCATTCCTGCCAATGCTGTTACCAAGACTATGTTTGGTATCAACAACGAGACAGGAGCCATCTACACAAGAGATGTAGGCCTGGACCGAGAGGTGGTGAAAAGTTTCCGATTAAAACTGCAGGTTGCTGATATGGGGGGCATGGGACTAACAAGTGAGGGTGTGGCTATCATACATGTATCTGATATCAACAACCACGCCCCACAGTTCAGCCCTGCCTCGTACAGTATGACAGCAGTGGAGAACAGGGAGGACTATGAGATTGGTAGGGTGAATGTGACAGACAGAGATGATCGTGGAACAGGAAACTGGGAGGCCAAGTACTTTATTTCCAACGACCCTGAAGGCATCTTTGCCATCAGTGCGGATCCTGCCACCAACGAGGGCATTCTGACAGTGGTGAAGCCTCTGGATTATGAAGCACAGCATGAGTATGTCCTGATTCTGACGGTGGAAAATGTCAATCCTCTGAGCAACAAGGCTCCCAACCTCCCAATGAGCACCGCTACAGTGGTGGTGACTGTCGTGAACGAGAATGAAGCTCCTCATTTCAGGGAGGACCCCATACAGATTGTGGTCCCTGAGTCTGTGGTTCCTGGGACTTTACTGAAAAGCAACATCGCTTTCGATCCTGATAATTCTGACCTGAGGTATGAGATTAGCAGAGATCCTGAGAGGTGGCTGGACATCAACAGAGTTACAGGAGACATTACTGCCAAGAGAACCTTCAACATGCGCTCTCCAAATGTTAGAAACAATATCTACAATGCTGTAGTCAAGGTTACAGATGCAGATGGTGTGTCGACCACGGCCACAGTGGCCATCACACTGAAGGAGACCAATGACTTCCCCCCTCAGCTCTTCCCTCTGAGTGGCACCGTCTGTAGGGATGCAGGCAGCAGGAGTTCTGGTCTGGCTGTGACTGCTGTGGATAAAGACCTTCCTCCGCACGCCGCACCCTTCACCTTTGAGATGCCTGACGATCTGTCAATCAACTGGACTGTTATTCAAGTCAATGATACTCATGCTGTGCTTCAGCCCCTCATAGAGCTGGAGGCAGGAGAGTATGCGgtcacagtgtttgtgtcagacTCTGGCAGCCCAGTTCTGAGCGCTTATGCTCAGGTCAACGTCaccgtgtgtctctgtgactcCTTTGGAGATTGTAAGTCTGAGGCGGGGGCTGTCCTAGGCTCCAGTGTGGGAATCAGCTTCATCgctctcatcatcatcatggccAGTATTGCACTCCTACTGCTGCTGCTCCTCCTGGCTGTGGCCGTGACCTCTTGTGGGAGACGCCACCATATCAAGAAAGGAACCGGTCTGCTTGTCGGGGAATCAGAAGATGACATCCGTGACAATGTTTTTAACTATGATGAGCAAGGCGGGGGTGAGGAGGATGAGAATGCCTTTAACATTGACCTGCTGTGGAATCCCCATGATGCACCTTCGACCCCCGGGTCCTACTATCCTGGGTCTGGTGTTCCCCGAGGCAAGCAGCCCCTCAGGAAGGATGCCCCACATAACCTGCCCTCACCTATCTACCCACGGAGGCCTCCAGCAGATCCCACTGACATCGAGGACTACATCAATGATGGCCTGGAGGCTGCAGACAAGGATCCTAACGTGCCTCCGTACGACACAGCCCTGATCTATGACTATGAGGGCGAGGGCTCACTGGCAGGCAGCCTCAGCTCCATTGCTTCAGGCAGCTCTGATGGAGACCAAGACTACGACTACCTCAATAACTGGGGACCACGCTTTCAAAAACTGGCCAACATGTATGACCCACGTTAAGGTGGAAACAGAGAGAAGACCTGTGTgattccccccctccctcccagtgttttttttttttctggacacATTTGAAAAGATATTAGTCCAGGACAAGATTTGAAGTGTGCCATggaaaaataaatgctataGCAAAACATTGGCCTTTAATCTAATGTGCCTTAGGTTTTATTGAGGATCATTTGGACACAAATGGCTCGTTGCAAAGTTGTGTGGTTAGCTCGGGAAAAGCAGATGAAAGTAAAATCGCAAGTTGACATGATCAGCCACGAGGCACGGAGCTGTGCATGCTTCAAGGCAAACAGGATGTTTAAATGATTGTCCATGTCTGGTTTTGTTTATCCTCAGACTCAGCAATGACGCATACAACAAGTCTGAGATATTAAACAAAATCgtcatgtatttctttttttatatatatataagtgattattttaTAAGGTAAATTTGCTTTGATattgattttgtttgtttatcttttttGATCACAAATCCTCCATTCCAGCATCTGTTACTTTTTTGGGAAAACAATATTACTCAACAAAACAAACTGTACCACACTATATTCTGTAATCAAACTGTTTGGAGGTGAAGACTTtgaa

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06809 CDH15, CDH3, CDH14; cadherin 15, M-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38717 lncRNA upstream 131751 22548700 ~ 22601559 (+) False G29139
TU38716 lncRNA upstream 153063 22548700 ~ 22580247 (+) True G29139
TU38711 lncRNA upstream 198442 22533942 ~ 22534868 (+) True G29135
TU38672 lncRNA upstream 325071 22407966 ~ 22408239 (+) True G29101
TU38655 lncRNA upstream 364807 22368129 ~ 22368503 (+) True G29085
TU38774 lncRNA downstream 527 22752468 ~ 22753645 (+) True G29176
TU38852 lncRNA downstream 245761 22997702 ~ 23001049 (+) True G29241
TU38854 lncRNA downstream 252937 23004878 ~ 23007982 (+) True G29243
TU38836 lncRNA downstream 264091 23016032 ~ 23019378 (+) True G29228
TU38839 lncRNA downstream 264091 23016032 ~ 23019378 (+) False G29228
XM_039795601.1 mRNA upstream 21376 22669904 ~ 22711934 (+) True acsf3
XM_039795604.1 mRNA upstream 35042 22669904 ~ 22698268 (+) False acsf3
XM_039794238.1 mRNA upstream 190314 22539280 ~ 22542996 (+) True trappc2l
XM_039794748.1 mRNA upstream 225755 22489512 ~ 22507555 (+) True cmtm4
XM_039794746.1 mRNA upstream 244931 22471509 ~ 22488379 (+) True dync1li2
XM_039794179.1 mRNA downstream 42237 22794178 ~ 22895007 (+) True ankrd11
XM_039794973.1 mRNA downstream 144401 22896342 ~ 22911278 (+) True slc22a31
XM_039794976.1 mRNA downstream 171883 22923824 ~ 22929666 (+) True sult5a1
XM_039794975.1 mRNA downstream 171883 22923824 ~ 22926475 (+) False sult5a1
XM_039794977.1 mRNA downstream 193103 22945044 ~ 22960403 (+) True LOC120555841
unassigned_transcript_140 other upstream 186038 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38307 other upstream 1329860 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 1972163 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 3213092 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 3235086 19498093 ~ 19498224 (+) True LOC120556586
TU38801 other downstream 12778 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 115779 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 240196 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 384791 23136732 ~ 23137027 (+) True G29292
TU39086 other downstream 975071 23727012 ~ 23731706 (+) True G29433

Expression Profile