RNA id: XM_039796004.1


Basic Information

Item Value
RNA id XM_039796004.1
length 3382
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120556409
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18999528 ~ 19008386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGCTGTTCAGGACGACACAATGAACAGTGGTGTTTTAGTTTAACGTTAACGGGTAGGccctttttgttcttttctttcttatttttaggcctatttattcatttatttttgtcatcCGAGGAGTTTTGTTTGGTACTAATTATTCGCAGcccaaggttgttttttttgtcatcatgGGGAGATTAGCTGCTGGCTTCCTCCTGCTCTCGCTTCTAAAAGTGTcggtgtgtgttcaggtgattGTTCCTCAGACGCAGATCAGCACACCTCTGTTTGCTGCTGTGACCCTCCGGTGTGACTACTCCACCTCTGCAAGCCTCCAAAATGTTCTGGTCACCTGGAGGTACAAGTCCTTCTGCATGGACCCCGTGCTGGATTACTACTCCACAGCGTACCAGTCTCAACTACAGATGGGACAGGACCCGACGAATGACTGTCCAGACAGTCAGCGGACGGTGCGCATAGTGATCCAGAAGTCAGGAAGCAGCGAGCCGACGCTGGGACCGGAATACAGTCAACGCAGGATCACCATCCAAAATAAGGCAGACCTGGTGATCACCGAGGTGATGTGGTGGGACAACGGGGTGTACTATTGCTCTGTCAATGCTGCTGGAGACACCTCTGGAGACTCTGACCAAGAAGTCAATCTCATTGTTTACGGCTGGCTAACAGTATTGGCCATGATCATTGGAGCCCTCATTCTGATCCTCCTCTTCTGTATATGCTGCTGTCAGTGCTGCCCTCAGAAATGCTGCTGCTATGTTCGCTGTCCCTGCTGTCCACAGCAATGCTGCTGTCCTGAAAAAGCGGTGATGCAGCATCGTATGATGAAGGACGCTCAGAGGGCCATGGGTCCCTGGTTTGGAGGACAGCCGGTATATGGACCAATGAGCAACGCCTCATCCCAGATGAACCCACTGCTCTaccaagGATCTGTTTCAGGAAAGAGCATCCAGATGCAGCCCatgcccctccctcctcctcattatTCAGCTTACAGCATGCCCCCTCCCAGTGTCCATGGCAACCACACCCCTGCCAACAGCAATCACATGCTGGACTACCTGGAGAGCCAGGTGAAGGGGATAGACATGGCCAGTCCTATGTTACAGTCCCAGCCTCCTCCACCCCACCACATGCAGCAGATGCCTCCTCCACCCCACCACATGCAGCAGATGCCTCCTCCACCCCACCACATGCAGCAGATGCCTCCACCCCACCACATGCAGCAGATGCCACCACTACAGCAGAGGCCCATGACCATCCCATTTTCCCCCGGCCCTCCCAGCATGATCTCTGCCCTTGATGAGGGCCCAACAGAGCGCCGTGTCATCACACTTCCACCAATAAGAGAGCAGCAGGTCAGAATCCAACCTTCTGCACCCAAGACTCGGCCCCCGAGCTCCAGCGAGAGCAGCCGCAGCGGCTTTGGCCGTCGTGACGACCGAGGATCAGCAGGCAGGCGCCAGCCCTCACCCACGCGTTCTAGAGGTGTTCCCAGGAGCTACAGCCAGGACTCCCTGGACGGGCGCAGTCACAGCGGGCCACGAGGAGGCATGGACCGCCCCCGCTCCCGCTCCAGGGATGACCTGTTTGACAGCAGGTCCAGAGGAAACTACTCTCCCCCAGCATCGCAGCGCTCCAGAAGAGGGTCCTGGAGCTCGGATGATGAAGGCAGcagcaggagaggaggagggacgagAGGAGGTGGAGGCTGGGTTGAAAATCCTCCGAGCTACAGGGAGtacgaaccaggaaagaaaccAGGATCACGGAGGATTGAACACTACTCTGACAAGAGTTCTCGCAGTGGCACCAGCGTCGTCATCTGAGCCCTCCAGCTGAACGCCCTGCGACCTCTGTTTCAGAGAACAAGCACACCTCACTAGATCTGGGAGCCTTGTTGTATGGCTACTGGTAAACTTTTAAATATcaatgttttgttatgtttttaaatgaatcatgaatcaactttttttttatcaccgtCTTGATATGCAGAAGTATTCATAAAATGTGCGATTTACAATCTCGAGATTGGCAATAATCCTCCTTCTCAAAGTGTGCATGTGCTAAAGAAAATGTTCGATGTCAGTAAAGAAACTTATTTAGTAGCtcctcatttgtttttgtttttaaatattgttttaaGAAAACTATGCAGGTCTTCTACTAAAGGGGGAATTTTTGAAATAATGTTTCCCTCTACTGGTTTATCAGTGTAATGGAAATTACAGTAGATTTGGACTAAAAGCCTCATGttagattattttttatatgtgGCTTTAATGGATGTTTCTCCTCTTAAAACATATTCGCTTGGCAGGAACACAGTTAGTTCTTATATTTGATAAAGCCATAAAACATTACGTGCCAAAGAAATTATGCTCAGGGCCAGTAACTATAAGCAAATTACAATTCTTACATTAGAACTATATAAAcctacataaatatgaatagACTATTGTGGATGCTGGAATTAGTTTTAAGCTATATTATTTTTGTAAATGGttatcagtgtttcccacagaataGAAAGCTATTTGTGGGGTGTTGCACCGTGTCAccgggggggtgggggaaggaATACTTATACTTATTTTCAGACACGCTGTTAGATGCTGTCCTCCTAtcctacttcaatgcctaacgaATCTATCTCTTTATCTCCCTGACCccgtctttcactggttgaagccggaaaatattgtaaacaaattaataacataactaattacagtGGTCGGACTGTTCAGCGCCATTTCAGAcagatacctccggttcaggctggtcctcatcctcaacacgtgcctttttcagtcgtggaacacattcagtgtaagagtaaaaaaatgacataacattatttatataaaaaaaaagaaattaataacgaaacgcaatgcgcggcggccggtgttgatagtgaggtgcaccgccacacattagtctgtgtgggaaacactggttaTTTTTCATATCTCCTGGATGTCTTGAAGTGAcctgtgtatttgtttttactaATTTTGTGAAGGAAAAGGTGTATTGCACTCTGTTTAGATAATATTAGTCTTTTTTGAAACTTTTGTATATAAAATTAAGTATCACTTATAAAAAATCTGCATGTAAATAAGTCATTTACATGGTGTTGATGTAGGATATGAAGTAATGTGAACTATTGTTACAGGCccaaaaagttgttgttttttcatttaaattacaGTTGTCAGCACCATATGAAAATGTTATACTATTATTCTCAGTGTACAGTTCTGGAAACACCTAGTTTCTTTGTCCCTTCCTTTTGCATATCATTTAGAAATACACCTATAATCAGTTACACATGGAATTAAAGTTGTTGACTTTTCCATTGTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638784.1 lncRNA upstream 152197 18846269 ~ 18847406 (+) True LOC120556026
TU37505 lncRNA upstream 383794 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 389725 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 554307 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 818402 18004828 ~ 18181201 (+) True LOC120555993
TU37774 lncRNA downstream 45738 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 49160 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 63434 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 74821 19083207 ~ 19087001 (+) True LOC120555697
XR_005638744.1 lncRNA downstream 78809 19087195 ~ 19091823 (+) False LOC120555698
XM_039795226.1 mRNA upstream 4325 18970586 ~ 18995278 (+) True LOC120555986
XM_039795228.1 mRNA upstream 4325 18970586 ~ 18995278 (+) False LOC120555986
XM_039795227.1 mRNA upstream 4325 18970586 ~ 18995278 (+) False LOC120555986
XM_039795225.1 mRNA upstream 30125 18958969 ~ 18969478 (+) True LOC120555985
XM_039794187.1 mRNA upstream 65779 18926047 ~ 18933824 (+) True vegfd
XM_039795102.1 mRNA downstream 2091 19010477 ~ 19023972 (+) True tmem39a
XM_039794662.1 mRNA downstream 65922 19074308 ~ 19087064 (+) False LOC120555697
XM_039794663.1 mRNA downstream 65924 19074310 ~ 19087064 (+) False LOC120555697
XM_039794664.1 mRNA downstream 65924 19074310 ~ 19086404 (+) False LOC120555697
XM_039794665.1 mRNA downstream 65924 19074310 ~ 19086330 (+) False LOC120555697
TU37478 other upstream 431123 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1256869 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3513182 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3553211 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5761784 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 478860 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 489352 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 489707 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 503970 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1702718 20711104 ~ 20761147 (+) True G28770

Expression Profile