RNA id: TCONS_00075200


Basic Information

Item Value
RNA id TCONS_00075200
length 927
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id XLOC_037417
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 46854545 ~ 47322964 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCACACATCcaaccagcaggtggcagtaatgcacctAGAAGTTGTAAACCAATAACCAATAAACCTTatatgaagaagaagaagaagaagtgacATAATTTTAGAGGAAAAGCAGCAGTGCCCACACCTGTTAACACAATACTCCGATAAGAGTGCCAATCATCTATGTAAATTGCATACCATATTCCTGCGGGATGTCCCATTTGCCAAACGAATCGGCTGTTCGGAAAACTGCTTCCTCGGTTACCACAGCAACCGaCCTCGCCAGTATGAACCAACATCTAATTTCTTTGCATGGAAAAGATCACTTCTGATATTCCGCCTGACATCTCTTATTGTGCTTCACGGAAGAAAGAAATTTATTCGGGATAGAGCTGATGGTCggAAATCTGCAAAGTGGACTCCACACCACAGGATTAGTATGCTGGCTTTAAGAAAATACTGAAAAGCAGAAGAAAAACTCAAAACTGGTCTATCAAGGCCAAAATACACAGAGGTCCTATTCCCGTGCCTGTGAATAGTGGAATTGACAGATCTGCGCTGGACTGCAGGATTTGGACGATTGCTTGAAGATGCAATAAAAGATTAGCAACATGAGGCACCCAGCTTCAAGAAACATCAATACCAGCAGGCCATGATGTTGGACTTCTCTTATCAAGCTGAATAACACCTGGAGGGAAACTTTTAACACACTTCACTTAACTCAATCCTCATCAAATCTAAATGCGTCTGGCACAAAGAGTCTGTCTTCTGGATCCTTCTTTGCCGAGCCATGAGTCTATTAATGGCACTCCAAGGAAAACAGGTTTGGAGACCAAACAGGAAAGCGCTGGATTTGAACCAGTTTCTATGGCAGGTCGGCGTAAAGCTTAGCCTTGCAACCCTGGACATCTGGCACCTGCACAACAGAGGACAGGAGATAGAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075199 lncRNA upstream 14156 46838646 ~ 46840389 (+) True XLOC_037416
TCONS_00073603 lncRNA upstream 238512 46489846 ~ 46616033 (+) True XLOC_037413
TCONS_00075198 lncRNA upstream 328634 46482929 ~ 46525911 (+) False XLOC_037413
TCONS_00075196 lncRNA upstream 423249 46415158 ~ 46431296 (+) False XLOC_037412
TCONS_00075197 lncRNA upstream 423249 46427592 ~ 46431296 (+) True XLOC_037412
TCONS_00073616 lncRNA downstream 806955 48123162 ~ 48127695 (+) False XLOC_037422
TCONS_00075205 lncRNA downstream 806955 48123162 ~ 48129327 (+) False XLOC_037422
TCONS_00073618 lncRNA downstream 811401 48127608 ~ 48129327 (+) True XLOC_037422
TCONS_00074937 lncRNA downstream 1064648 48380855 ~ 48381572 (+) True XLOC_037425
TCONS_00073625 lncRNA downstream 1366568 48682775 ~ 48687885 (+) True XLOC_037427
TCONS_00073605 mRNA upstream 54925 46745348 ~ 46799620 (+) True XLOC_037415
TCONS_00073604 mRNA upstream 170006 46644633 ~ 46684539 (+) True XLOC_037414
TCONS_00073601 mRNA upstream 1011066 45839260 ~ 45843479 (+) True XLOC_037409
TCONS_00073599 mRNA upstream 1060351 45789887 ~ 45794194 (+) True XLOC_037407
TCONS_00073598 mRNA upstream 1156901 45680802 ~ 45697644 (+) True XLOC_037406
TCONS_00073606 mRNA downstream 645275 47961482 ~ 47970760 (+) False XLOC_037418
TCONS_00073607 mRNA downstream 645516 47961723 ~ 47967510 (+) False XLOC_037418
TCONS_00073608 mRNA downstream 649960 47966167 ~ 47970760 (+) True XLOC_037418
TCONS_00073610 mRNA downstream 690874 48007081 ~ 48039964 (+) False XLOC_037419
TCONS_00073609 mRNA downstream 690874 48007081 ~ 48039964 (+) True XLOC_037419
TCONS_00073602 other upstream 423412 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 1032960 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073592 other upstream 1313952 45540477 ~ 45540593 (+) True XLOC_037402
TCONS_00073589 other upstream 1520440 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073586 other upstream 1790276 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073638 other downstream 2469113 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073648 other downstream 2772793 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073655 other downstream 3484150 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073665 other downstream 4766104 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 7931993 55248200 ~ 55248314 (+) True XLOC_037493

Expression Profile

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