RNA id: XM_039796021.1


Basic Information

Item Value
RNA id XM_039796021.1
length 5723
RNA type mRNA
GC content 0.49
exon number 7
gene id lrp3
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1818431 ~ 1831946 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCGGGAGCGCACTCTGCTGAAGGACACAGATGTCGAGCAGCCCGTGGACATTGTGTCCGAGATAAGAGCACCAAGTCCCCGCTGGACCATGGGACTGACGGGGCTGCTGCTGGCGCTGCTCTGGCTCCGCTCGGCTCTGCTCTGTGCAGCAGGCTGCAGTGAGCGAGTGGAAGTCCATACTGAGCGGAGGGGTGTGATCTACAGCCCCTCGTGGCCTTTAAACTACCCCCCTGGTGTCAACTGCAGCTGGCATATCCAGGGCGCTCAGGGAGAGGTCCTTACCATCAGTTTCCGTAACTTTGACGTAGCGGAGTCAGGGAATTGTTTGGGAGACTGGCTCCTGCTGACACCAACGAGGAATGGGGGGGAATCCAGGCTGTGTGGCTCCATGGTGCCGCCACCCTTCATCTCCACCAGGGGGCGTGTTTGGCTCTATTTCCACTCTCAGGCCAACAGCTTGGGGCAAGCCCAGGGCTTTCGCCTGTCCTACATCAGAGGTCACCTGGGTCAGAGCAGCTGTCAGTCAGATGAGTTCCTGTGTGGGAATGGGAAGTGTCTTCCTCGCTCCTGGAAGTGCAACGGTCAGGATGAATGTGGCGATGCCACAGACGAACGCAGCTGCTCCCCCCCTCCCACTGAGGCCCGGCCTGGCCCCTGCCCCTTCGGCTCCCTCCCGTGCACTGAGGCCCAGTCCACCCGCTGTCTGCCTGCAGCCCTGCGCTGCAACGGAGCCCGGGACTGTCCCGATGGCACCGATGAGCTGGCTTGCCCCGACACAACCTGTGGCAAACATCTGGGGAACTTCTACGGCTCCTTTGCTTCCCCAGATTTTTTCCGGGCTAACAGGACTGCTGTGGCGGAGCTGAGGTGTTCGTGGTCGCTGGACACTCAGGACCCCAAGCCCATCGTGCTGCAGCTGGACCTACAGCTGGCGCCCGGAGACTCGCTGCATGTCTACGATGGCCTGCTCCAGCATGCAGAGCACCTCTTACAGGTGTTGTCGTATCATAACAACAGGCGCCCGGCTCTGCTGGAGTCCAGTCGGGGACAGATGAGTGTTTTGTACATGGCCCAGCCTCACAGCCCTGGACATGGCTTCAACGCCACATACCAGGTCAAAGGGTACTGTTTTCCCGGCGAGCGTCCCTGCGGCAGCGATCAGGGCTGCTACTCTGAACGCCAGCGCTGCGACGGCTACTGGCACTGCCCATCGGGCCGCGACGAGGAGGCCTGCCCGACGTGCCCGGGCGGGGAGTTCCCCTGCGAGGGCGGTCCTGGAGTGTGCTACCCGGCCTCTGAGCGCTGCAACAACCAGAAGAGGTGCCCGGATGGGTCGGACGAGAAGAACTGCTACGACTGCCAACCTGGAAACTTCCACTGTGGGACTAACCTGTGCATCTTTGAGACGTGGCGTTGTGACGGCCAGGAGGACTGCTTAGACGGGAGCGATGAGAGGGACTGCCTGGCAGCGGTGCCCAGGAAAGTGATCACGGCCGCCCTGATCGGCAGTCTGGTCTGTAGTCTCCTGCTAGTCATTGCCCTCGGCTGTGCCCTCAAACTCCACTCCCTCAGGAACAGAGAGTACAGAGCTTTTGAGACTCAGATGACTCGCATGGAGGCCGAGTTTGTTCAAAGAGAAGCTCCCCCTTCGTATGGTCAGTTAATCGCCCAGGGTCTCATCCCCCCGGTGGAGGATTTCCCAGTCTACAACCCCACCCAGGCCTCCGTGTTGCAGAACCTGCGGTTGGCGATGCGCAGACAGATCAGACGCCACTCGACACGGCgctccaccacctcctcctctcgtCGGCGTCTCGGGCAGCTGTGGACCCGGCTGTTTCACAGTGCGGGGCGAACCAGAGGCCACGCCCCGCTGCTCGACTCCCCTGGACCCACACAGATCACATTGGGGCTCCACAGCTACCGAACTGTGGGTGTGCAGGGGACCCTGACAAGGGCCAGGTCTGGAGCTGGGCTGCGGGATGACGCTGATGTAATGGGTATGCCTGGTTCCTGCTGCTCAGCCACCATGGACCTGCAGTCATGCACGCCAGAGAGCCCTGCATCCCCTCTCTCATCGCAGTCAGTGGACAGTCCAGAGGAGGAGGAACTCTCACCTGTCAGCAGGGGAAGCAGTAGGGCTCCACAGTCTGAGCCCCCCACCCCTGTTCAGAGTGACCCTTCAGCCCAGGAAGCCTCTGTGCCCCCTTGCCACACCCGGGCATCTAGGAAACTAGTCCTGGAGCTCGCTGTTAACCTAAAGGGTGTTTCCTTGAGACGTTACTCCCCCTTGGGGCCCTTGTCCCCCATCTCACCCCCTGTGCTTCCCAGCAGCTCCCAGACAGCCCCAACCCACCCTCACTCCCAGGGGCTGGAGGGGACTTCACCTCTCGAGCCCTTGTCTTCTTCTGTGAAAGCAGAGGACAGAAACAGCCACTTTACCGTGGAAGTGCCAAGCAGAGAAATAAGAAGCAGggatgagaggaggagggagggaaagagcaGGCTCTGCAGGTTCAGCAGGACCTTCAGTGATGAGGGGGGAGATTCAGGGAGGGAGACAACGCCATGCTGAAGAGTTTAGGAAGATACTCTCCTTCCCCTCACTCTGTTGAGACCTGGTGTCAGCAATATCTGCTCTGTCCGTTAAAGTGTCCTTTAAATATGTCCCGACCACATCCAGAGGTGAGACCCGTACCTTAGCCCACCACAAGGAggaagtacatacagtatatcattaGTTCCATTCAACACTTTGAGTGCATACACATCTGCATATGCACAAAATGATGCATATGCAATTAAAACCAGCGTTGGCAGTGCTTATGGTCTGTATAATACAGTAAAACTCTTTGTCAAACAGGAGCTAAATGTTGACCCCCACAGTTAAATGCAAACAGACACCCTGTTTAACGTGTTTGGACATAAACTCATCATGAGCCTGTTCCAGAAAATCTAACCCTTTGGCCACCAGTACCAATACAATATTGGCAACATGATCTTACAACGCCAAAGCAGCCTTTGTGTCGTTACCCAGAGCCATTATGCACCGCTATACTGTGAACCATAAAAGCCTGTTAAGTGATCACATATTAATTTACCTGATTAATGATACTCTAgtctgggggaggggggggagacagGTCTAGTTAAAAACCAGACAGGTCCAGTTGTGGGTTGGTCAGTGATGTCTTTTTAGTAGTTTTTGGACAataatggagctctatggcgcAGAGGAATAAGTTACAATATGTCAGGCATCGGGGTAATACATTGACGATTAatacattgttggttttggtgtttTCATGGGacttgttgacaataagaaaagtaTAAAATAACACCAGACCTACCTTTTTACACACCTTTGAACCACAAacgtttgacattttggggaataCACTCATTTGCTTTCTGGTGGAGGGTTAGATTGGAAGATTGATACCAATCTCATATCTGTCTGTAAAATATAAGGCTACACTCGGCAGCCAGTTAGTTTAGCcaagcttagcacaaagactggaaacaggctCTGTCTGAAGGTAGCGAGTACGCTTCAAAGGTGCTGGTGGGCAGGTCTGCTGGCTGTAGTCTTATTTATAAGGATGTGGAATATGGGAGTGGTATTAATGTTCTCCTCTAACTCTTAGCCAAATTTTCTCCCAAAAAGTCAAGCCATTCCTTTAACAGTGCAGTGTCACTGAATCATTCAGCGGTTCAATCATGCCAAGCCTTTGTCAGTATTTATTCAAAATATACGTTACCTATGCTTTTCTTCTTCAATGGCCCCTTTTAAACATGAAGTTTTTCATTATGCTAAAGAAGTTGTATCAAGTGGATTTTTCAATTCACCATTTTTAACTTGATATATCATCAGTTTTAAAAAGCCAAACTTGGATGGAGACTGAAGTAGTGTGTCCAAGTATAAAGCCTGTAACTCTGCTCAGCCCTTAGTCCTCCTCAAATCAAACCCAAACTGTCCTCTTAAGGAAGCCTTTCCTGACTTGAATGAACGTGACTGTGTCTGCTCTGATTTCTATTCAGTGCAGTGAAGACTTTTTGTAAATGTCGAGGGATTGTCGGGAAGAGAGGCTTCACTTCAGAATATTGATTGTTTGTGGAGTACTGTTCATCCCAGCGGTACCTGTGCTGTACTGCTGACTGCACACTGGTCACTGCAGACCCCTGGACTGCTGGTTTATTCCACTCGAAATTCATATCTATGCTGTGGGATTTTCTATGACAGGTTGTTGAAACAAAGGCCTCTATTTTTCTGCAGTCTTCAGTGGGGACCTGAACAAGTCCTACTTTATATTTATCTCTCTTTATTGAACTTGAGTGAAACTGAGCACCTGTGTCTATGATGTTTTTTGTAAAGCTCCCTAATTGCTGGTGGACCTCTAAAGAATGTATCATTTTCATTGTTTAACCTCTTTTACTGCAGGATATGATACTGGACAGAAAAGAGATATCCTGTGTAAGTAGGGAGAGTATGAGGAACGCTGGTTGATTTTTAGCTGCAGTGTCAGGTTTCTGTTGTTCTTCCTTTAAGTGAGCTGAATGCGTCATGCTGCTATCCTCATGTGCTTCCTTCTTATAGAAGTTTTGTCATAAACAGCTGCTACATGTTATGTGCCATTAGAGATGTGTCCACAAGTAATTCCTGCCTAATGATTTGATGCATTTCCATTTCAAATCAGTTTACTCATTCCCAGCTTTACACATTTTGTGCTCTTTTTTTCCTACCTTATTTAAGTTGAAAGCCTGCCCGTCTGCATTTGACTTTAGttaattagtttaaaaaaacaatcccATATCTGCAGAATGTATGTCCTTACTTGCTTTATGGTGTACAGAAGTGTGTTAAAATGCCTTAATGTTTTTTCCTTGCTGTTGTAAATATCACGGACAGTTTCACGGCCCACAGTTGTGGTATCCACGTTGGAAGAGATTAGATATATCTGTGTCTGGATGCATCTTTAATTATATGACATGGGATTGGTGCAACCAACTGTTCTGGAGTTATAGTGCACTACTGCATCAGGAATCTCTGGGATTATTATAGCAGGGGAGttaggaaaaataaaaatgagatTTTCAATAACCTTATTCCAGTGTATTTacctgtttatttaaatgataATCTGTTAAAGTCTCGATGAAATCCATTGCTTTGATAGTTTTCAGACTGCAGCCAACCAATTCTAGAGAATGATGTGGTAACATattacatttgaaatgtaaagAGAGATTGTCACATTGACTGCTAAGGTGATGTTTAATTATCTGTCAGCCAAGATCAGGAGTTTCTGTTCTGTATCCTGGGTTATACTGGTTTGTTTAAATTGTGATTAACTGCTGGGCAGAAGCCACTTCAAGATCTTTTAAACTGAGTGATAAGTGGGATTTTTAATGGGATAACACATAGGTAAATACACTGGATCCAGGCCACTGGAAAGTAAAGTGCTACTGAAGAGGTAGTCTGATAATGGCATACCCTGTCCTTGCTGTTTGATGTTGAAGCTTCTTCCACGTCAAAGGCTGAAGAGCATTTCTCTTATTTAAAAAactatatttgtatattttgtgCTGAAAGAGAAATGCCACCATGCCATTATGGGGTTTGCTGATCAAAACCCTGTACAGCCTTCTGCTGATTAGTCATTGTTTTGCTGTGCCTGCAATTATTAAACTTCAAGCTCTTTATCATTTACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33799 lncRNA downstream 77608 1733018 ~ 1740823 (-) False cep89
TU33757 lncRNA downstream 155945 1661728 ~ 1662486 (-) True G25113
TU33756 lncRNA downstream 156734 1661359 ~ 1661697 (-) True G25112
TU33755 lncRNA downstream 157078 1660832 ~ 1661353 (-) True G25111
TU33754 lncRNA downstream 157696 1660494 ~ 1660735 (-) True G25110
TU33921 lncRNA upstream 616551 2448427 ~ 2449619 (-) True G25246
TU33920 lncRNA upstream 617378 2449254 ~ 2449619 (-) False G25246
TU33931 lncRNA upstream 817352 2649228 ~ 2649449 (-) True G25256
TU33952 lncRNA upstream 997661 2829537 ~ 2829747 (-) True G25275
TU33953 lncRNA upstream 1062839 2894715 ~ 2895109 (-) True G25276
XM_039795406.1 mRNA downstream 44010 1744193 ~ 1774421 (-) True rhpn2
XM_039795405.1 mRNA downstream 44148 1744192 ~ 1774283 (-) False rhpn2
XM_039795088.1 mRNA downstream 77592 1664770 ~ 1740839 (-) True cep89
XM_039795401.1 mRNA downstream 176092 1587544 ~ 1642339 (-) True LOC120556047
XM_039795403.1 mRNA downstream 262785 1511493 ~ 1555646 (-) True LOC120556048
XM_039795607.1 mRNA upstream 3212 1835088 ~ 1846414 (-) True dnaja2a
XM_039795606.1 mRNA upstream 4142 1836018 ~ 1846922 (-) False dnaja2a
XM_039795842.1 mRNA upstream 16978 1848854 ~ 1871276 (-) True LOC120556324
XM_039795224.1 mRNA upstream 40955 1872831 ~ 2039002 (-) True itfg1
XM_039795904.1 mRNA upstream 1010567 2842443 ~ 2961584 (-) True cdh8
XR_005638786.1 other downstream 176083 1588886 ~ 1642348 (-) False LOC120556047
TU33668 other downstream 361340 1431968 ~ 1457091 (-) False LOC120555898
unassigned_transcript_137 other upstream 1445 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 443599 2275475 ~ 2277091 (-) True G25228
TU33896 other upstream 443599 2275475 ~ 2276009 (-) False G25228
XR_005638726.1 other upstream 4324346 6156222 ~ 6167529 (-) False LOC120555534
TU34701 other upstream 4810570 6642446 ~ 6644606 (-) False dok4

Expression Profile