RNA id: XM_039796026.1


Basic Information

Item Value
RNA id XM_039796026.1
length 5222
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC120556420
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 37410624 ~ 37584552 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCATTCATTATAGCAGTGCACGAGTTAGTGTGCACTTGCAGCGCGCCCCGATCCGCCATTTGGCAAGAAAACACGGGTTAGTATAATAAGGATGAGACACGGAGCTCATCCATATTAGAAGAGTCTTTAATAAACTCAGACCGTAAAAGACACTCCTCCTGCTCCCGGCTCCCACTGCTCCGCCGCTTCCGTACTGAGTCGATGCGCGGGAGGAAACACATAGCCCCATCTTTATCAGCATCAGCATCGCCTTGACAAGACAAAGAGAGCCCAGCGAATGAAGATGTGCTCCAATAGCAGGAGAAGCCAGTCTTAAAGTCACTATTTCTGCAACCGTGCCCGCCCGGAGGCAGACAGGCACCGGTCCTAGGAGACTCTTTGGGGATGCGCAAAGATGTGAGTAAAGAGTGAGAGGCATTGTGATTGGCCATACTCCTTCTAAAAGCATCAGCATCATGTTTGCTCCAGCCAAAGCATCAACGAGGTGCCATCAAACTTGAAGGAGACGTGTTCTCGGTCTGCGCAGTTGATGCGTTCACAGCGTCAACCTTTAACTTGCATCATTCCCCCCCAAAAGAGGAGGACGCGCTGTCCGTAGTGCTGAAACAGAAAGACTTGGCGGATCAACTAGTGAAGAAGAGGGAGACGCTCTCACTTCGCTCACCTGCTTCTGAGCTTCCGTGGTATTTGGCACCTTCAGTAAGAACTGATCACATTGTCGTCTGACTGTGCCTCATCATGCCGTGGATGAAGTTAAAGATGGTGGTGGACTCCCTGCGTGGACGGAGAAGGAGGCTGCCCTGTTACCTCTGGTTCCTCCTGCTGTTCGCTGCTGGAGGTCTGGTTCTCTTCATCCACCAGCGAGATCTGTCAGAAATGGTCCAGCAACAAGCCCCAGGTGTGAAGCTTGGAAGCACTCAACGGCAGTCCAGAGAGacTCTTTCCAtgcaagacaaagacagaggCAAATCTGATAATTATCAGCTACAAGAAACAGACGACATCTTGTCCAGCCCAATCCCTCCAATGCAGTTCCCACACTTTGAGGAGAGTAGACAGGCGGCCACCCTTGGGTCTCTGGAGCAGAGTAGACAGACGGCTATCCCTGGGTCTCGAGAGCAGAATAGACAGATGCTCACCACTTGGTCTCGGGAGCAGGACATAACCTCCCTTCATGTCTCTAAAAGACACCGCAAACTGCTGAAAACAAGTCCTCCAATCCATCACACCACCAAAAAGGATTCCTCATCCCCTTCTTCTCCcttgtcctcttcttcttcctcctcctcctcatcctcagtTTCCTCCCCTTCTGTCTTTGGCTCTTCCATCCTTGACAGGTGGAAAAAGCTTGCCGATATTCAGGTTGCACGCCGGCAACTGATGAAGGAGATCTGTGCCAAGTACAAAAGCAACATCTCCAAGACCATCACAGGTCATCATGTGAAAAACCTCTTTGTGGAGGACAAGTACAAGTTGTTGTACTGCCAGGTGCCGAAGGCGGGCTGTTCCAACTGGAAGAGGACCCTGATGGTGCTGGCAGGCATGGCCCCCAATGCTCAGAGCATTAAACACGACACAGTACATGACGGCAACCATCTCAGGGAGCTTAGAACCTTTGACCACAAAGGAGTCATGCACCGTCTGGAGACCTACACCAAAGTCATGTTTGTCCGAGAGCCTTTAGAGAGAATAGTGTCAGCTTATAGGGACAAGTTTGAAAATCCTAACGACTACTACCACAACCTGTTTGGGAAACCCATCATCTCCAAGTACAGGGCGAACCCATCCGCTGAGGCCCTAAAGACAGGCAATGGGGTCACGTTCAAGGAGTTTGTCCAGTACCTGCTGGATGTCCACCGGCCCGTGGGAATGGACATCCACTGGGAGCAGGCAAACCAGCTCTGCAACCCTTGTCTCATAGACTATGACTTCATCGGCAAGTTTGAGAGCATGGAGGAAGAGTCCAACTTTCTCCTGCGATTGACTGGGGCACCACCCAACGTCAAGCTGCCCAGTTTTAAAGATAGGAACCCAGCTGACAAGAGAACATCTACGGAGatcacagaaaaatacttttcaCAGGTCAGCACGTTGGAGAGACAGCGTATCTATGACTTCTACTACACAGACTATCTGATGTTTAACTACACCAAGCCTTTTAAAGATTTATATTGACTGACTCTAATCAACTCTTGAATCACAGTCACATTTCACATCTACATCTCTACCATGATAGTATTAACATCAAGATGCTAACTCGCACGCTCACATGGATCTTTGCATCGAAGCAGACGGATCAGAAACTAAACTTCCTCTGATTTTGCTTTTTATGGATACATTTCTACCAGATAATCTTCATTTTCAGACAAATATGAGATGAGATGAAAAGGTTCATGTGATTCCAATTATTTTAAATTGGCCTGAAATGGTAATTGGTTATTTATTCAATGCTAGCACATGGTGAGGtagaatattaaaataataaatgttatgCTTCTAAAAAACAAGTGTATTATTGTTCAACTGGATTTAAATTACGGTATGCCTTACTGTAAGTCAAATAGGATTTGcatatgtgttttatgatttgattTAACATAGGCACCACCTGGGTGCACTTTAATATAGCTTCTAATCACATTGCTAAAGAAGTGCCAGAAGTGATTTCACTATACAGAACAGTATGTTATGTAAGTCCCTATAACCTACCTTTAGAATAATGATATCAAATTTATGAATAGTTTATCTAGTCCTTGGTTGACCTCATATTAAGATCAAGTAATGATCACCACCATGTACTGCAATTTGTTCATCTGAACTCACTGCATTTTAATTGTACAGTAATTTATTTGATATATTTGCATTTACTATTTGACCTACAGCAGGTTAGGCATCAGTATACCTCTATGTATCAGTGCATACTAATACAGATATTTCATGTAAATGGTTTTACTAAACATAAACCATAGCTAaattaaaaactatatattgtaTACATCTTTAAAATGTGTCAAGTGTTGCCCACTCTAAAGCTGTGTGCACTTATTGTAGCATTTTTGTATTTCTAACTTTGTTGGTTAGGTTTGTTGGGAGGACATCCAGGTATTTGCAGGGTACAAAGTGTTGCTGACAATGCCTCCTAATGCCTGTCAGTGTTAAAGACTTACTAATCATTCCGTTTTAGAGCCTGTTGATGGAGTTGGCAAGCAAATTGGTAAAagtcaacaaaaaacaacacaaaaacagatgttAAGACTTTGTATTATGACAAATGTATGGTTTGGACATTTTGAGgatgagaaaatgaaaagagtGTGCCCAAACTTCTCCATCCGTCACACTAAACACCCCCTGAACTGCTATCACGTACGAATCTCAAACTTTCAGTAATTCCATAGCGTCTGTAGTTATCACATCTATTCTACATCACCATATAGGCTTTTTTCGGACACTACTGTGTACAATTGTACAAAGTATAATGGGCATTCAGATGACTATATATTTTTCTATGTATttctaaaatatatattcagtgctTATGGTGaaagtatttttatttcctttttgatgTCATTTGTTCTGTAGAGTTGTTGTGTAACAGAAGAGTTActttccaaaataaaatatccaCCAGCTGAAAACCAGAAGTATTACTCTCAAGAaactaaatgactgaaaaacCTTTGCGGTGCCATTTAAAGTGGAGGAAGATAACTGAAAAAGTTTGATTGATGAATTGATACCAGTCGGTGCTTTAGAGGTAgttaaatattgtttttaatgaaaatggatgtatacatttttggaaattagCTCTTCAATTACTTCTGTTTGGTCTATCTATATGATAATAGACCCTGTACAGATGAGCTGCATTCCACCTAGTTACTCATCCTGGCTAATGACATTTTTACCCATAGCAACTCctctatgtgcgtgtgtgtggtacTGAAAGAGCTGTAGATGTTTTGCAATCTTCTTCCTGCATCTTTTGGAAACATGCACACATTGCTAAAAGACACTAAAAGGGTAGACTATCCTGTGTGTAACATTACTTTACTGCTATATCTCCAAGACACCATCCAGCTGGTACTAAAGTCGGAAAAGCTTTTTTCTTAATTACGACTTGGTGCAGGTCAGAACACATAATGAGCTCTAGTGAAAACTGCACAGAGACTTGCAATTCTTACTTCCTGAGAACTCAAACCTTTCTTAAATTGGGGCTCTACTGTATAATAACCCTTTCTAACATTAAACATGTCCaagatacaaaaagatttaatATTGGGTAAAAAGGAACAGACCCATTCATAAGATAATCACGTTCAGAAAATCTCCAAGATTATATTGACTAAATAGAGACCTCAGACAAAACGCTGGGTTTAAGTGAATACACATGATAACTGTGACACCAAAATAACTGTTGCAAATAAATACTTACATTTACACAGAAATaccttttaataaacaaaatacagaGTAAAACCaatttaaatcaaaataacaAGTCTGGCTACAACCAAAGTGGGTAGCAGTGTATTTTTAAAGAGGGCGCGTTGCAAAGCTGAACTGTATTTATTCTGATGCTACAACAATCTGTGGCTAGTCTCCTATAAAGTAGCAATCACTATTCAGCTATACACTTTGCAGCTcactgaaaatgtgttttatgtaaCAAAATACTTTATAAAGAGACATATTTGCCTATGAGTAAGGGGaaatttatataatttaaatcTATACACACTATAACCAACTTTTGAACACCTTTAACAATTTTGGTGGTAGTAACGTTTCACAATGATGGTAATTGTCTGAACTTTGTCAGTATACTGTGTTGGCTTTTGCAATTCCAAAATCTTTGTTTAGGTTGTGGTCGGATTCTATGTAGGTATAGCCAATATCTGGCCAAAAGAGCTACTGCATTATGCTGAGTATTACTCTGCTAAAACTCTGTCCGTCCCTGCCCCCCTCCCGCCCCCCCCTGCTAATAAAGTTTTCTTGGTATGTGGGTGTATGGACAGATTTATCAAAAGCGTAATTACAGTAACAAGTGAATGTATAACTGTTTATTGTTGGTGTAAAAGTGTACGATCTTAAGCCCTTTGCCTTATTTTACACTGCCAATCAAATGGTGTATTTCAGGAAGACATTCTTCAGGAGATTATTATTTCTGACTAATGAGTGTCTACTAATAAATTGTCTTTAGCATTTTAA

Function

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43067 lncRNA downstream 128602 37244095 ~ 37282022 (-) True G32434
TU43061 lncRNA downstream 157297 37231141 ~ 37253327 (-) False ss18l2
TU43029 lncRNA downstream 221900 37186079 ~ 37188724 (-) True G32404
TU42963 lncRNA downstream 504483 36905700 ~ 36906141 (-) True G32346
TU42962 lncRNA downstream 504965 36904817 ~ 36905659 (-) True G32345
TU43102 lncRNA upstream 23089 37607641 ~ 37608413 (-) True G32463
XR_005638724.1 lncRNA upstream 57091 37641643 ~ 37645301 (-) True LOC120555521
TU43109 lncRNA upstream 116689 37701241 ~ 37701528 (-) True G32469
TU43131 lncRNA upstream 157062 37741614 ~ 37742768 (-) True G32484
TU43153 lncRNA upstream 204181 37788733 ~ 37790655 (-) False LOC120556344
XM_039795763.1 mRNA downstream 21804 37358610 ~ 37388820 (-) True LOC120556282
XM_039795761.1 mRNA downstream 22720 37358610 ~ 37387904 (-) False LOC120556282
XM_039794421.1 mRNA downstream 144271 37254590 ~ 37266353 (-) False lsm14ab
XM_039794422.1 mRNA downstream 144272 37254590 ~ 37266352 (-) False lsm14ab
XM_039794420.1 mRNA downstream 144272 37254590 ~ 37266352 (-) True lsm14ab
XM_039796152.1 mRNA upstream 144403 37728955 ~ 37733168 (-) True LOC120556507
XM_039795608.1 mRNA upstream 152038 37736590 ~ 37737366 (-) True LOC120556181
XM_039793985.1 mRNA upstream 158282 37742834 ~ 37784208 (-) False LOC120555298
XM_039793982.1 mRNA upstream 158282 37742834 ~ 37784208 (-) False LOC120555298
XM_039793974.1 mRNA upstream 158282 37742834 ~ 37784208 (-) False LOC120555298
TU42453 other downstream 2811083 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 3594254 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 3594254 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 3961563 33438463 ~ 33449061 (-) False znf710b
TU42136 other downstream 4062534 33342247 ~ 33348090 (-) True wdr76
TU43972 other upstream 3064124 40648676 ~ 40662621 (-) True G33122
TU44387 other upstream 4173239 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 4814739 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 5400671 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 5630082 43214634 ~ 43214987 (-) True G33847

Expression Profile